Wall clock time and date at job start Mon Mar 30 2020 20:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.00193 * 2 1 4 4 C 1.54316 * 109.98661 * 238.97116 * 2 1 3 5 5 C 1.55160 * 102.86053 * 263.04973 * 4 2 1 6 6 H 1.08991 * 111.00266 * 82.37937 * 5 4 2 7 7 N 1.46902 * 111.03135 * 206.21421 * 5 4 2 8 8 C 1.54906 * 101.58076 * 324.29869 * 5 4 2 9 9 N 1.47027 * 109.88431 * 121.09515 * 2 1 3 10 10 C 1.36940 * 125.64411 * 300.51288 * 9 2 1 11 11 H 1.07998 * 119.99866 * 19.56492 * 10 9 2 12 12 C 1.38804 * 119.99682 * 199.55868 * 10 9 2 13 13 N 1.31627 * 120.00132 * 28.19161 * 12 10 9 14 14 Si 1.86798 * 120.00225 * 208.18368 * 12 10 9 15 15 H 1.48504 * 109.47394 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.47200 * 60.00405 * 14 12 10 17 17 H 1.48503 * 109.47463 * 300.00492 * 14 12 10 18 18 H 1.09002 * 109.46902 * 300.35802 * 1 2 3 19 19 H 1.09000 * 109.47084 * 60.35678 * 1 2 3 20 20 H 1.08998 * 109.47543 * 180.35810 * 1 2 3 21 21 H 1.09002 * 110.92552 * 144.63640 * 4 2 1 22 22 H 1.08995 * 110.74133 * 21.37497 * 4 2 1 23 23 H 1.00903 * 110.99751 * 173.67217 * 7 5 4 24 24 H 1.00899 * 111.00350 * 297.61959 * 7 5 4 25 25 H 1.08997 * 110.37101 * 278.16857 * 8 5 4 26 26 H 1.09007 * 110.36370 * 155.84775 * 8 5 4 27 27 H 0.96997 * 119.99946 * 5.62598 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0574 -0.7475 -1.2427 5 6 2.3475 -2.1693 -0.6932 6 1 1.4382 -2.7694 -0.6628 7 7 3.3899 -2.8375 -1.4837 8 6 2.8523 -1.8530 0.7367 9 7 2.0301 -0.7141 1.1839 10 6 1.7701 -0.3799 2.4863 11 1 0.9251 0.2492 2.7240 12 6 2.5927 -0.8499 3.5007 13 7 3.8578 -1.1155 3.2524 14 14 1.9046 -1.1053 5.2184 15 1 2.9783 -1.6093 6.1120 16 1 0.7983 -2.0946 5.1665 17 1 1.3901 0.1854 5.7427 18 1 -0.3633 0.5194 0.8868 19 1 -0.3633 0.5083 -0.8932 20 1 -0.3634 -1.0276 0.0064 21 1 2.9708 -0.2849 -1.6168 22 1 1.2973 -0.7834 -2.0231 23 1 3.6513 -3.7183 -1.0665 24 1 3.0932 -2.9644 -2.4397 25 1 3.9059 -1.5746 0.7143 26 1 2.6997 -2.7112 1.3914 27 1 4.2358 -0.9065 2.3840 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575589582.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:19:58 Heat of formation + Delta-G solvation = -8.827750 kcal Electronic energy + Delta-G solvation = -10292.766223 eV Core-core repulsion = 8470.683354 eV Total energy + Delta-G solvation = -1822.082869 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.80021 -35.42419 -34.05716 -31.06248 -29.49081 -26.87259 -25.28576 -21.63986 -21.08064 -19.35063 -17.03419 -16.47643 -16.28167 -15.69221 -15.25065 -14.54060 -13.90552 -13.80212 -13.36679 -13.29133 -12.55797 -12.37391 -11.92640 -11.89386 -11.78654 -11.63287 -11.38472 -10.50066 -9.68722 -9.00624 -8.31954 -5.35095 1.55452 1.63983 1.83025 2.63197 3.13623 3.35655 3.72660 3.81935 3.97936 4.18538 4.38675 4.56896 4.63455 4.87356 4.95125 4.96130 5.07701 5.20225 5.24664 5.52580 5.72140 6.19578 6.33305 6.63252 6.92477 7.71910 8.32466 8.98504 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.056555 B = 0.016889 C = 0.014108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.977359 B = 1657.487540 C = 1984.248148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.138 3.862 3 H 0.017 0.983 4 C -0.104 4.104 5 C 0.084 3.916 6 H 0.048 0.952 7 N -0.840 5.840 8 C 0.159 3.841 9 N -0.619 5.619 10 C -0.342 4.342 11 H 0.060 0.940 12 C -0.083 4.083 13 N -0.944 5.944 14 Si 1.117 2.883 15 H -0.291 1.291 16 H -0.280 1.280 17 H -0.273 1.273 18 H 0.032 0.968 19 H 0.078 0.922 20 H 0.047 0.953 21 H 0.068 0.932 22 H 0.099 0.901 23 H 0.347 0.653 24 H 0.355 0.645 25 H 0.005 0.995 26 H 0.010 0.990 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 -2.106 -8.553 10.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.035 0.965 4 C -0.142 4.142 5 C -0.029 4.029 6 H 0.065 0.935 7 N -0.372 5.372 8 C 0.033 3.967 9 N -0.345 5.345 10 C -0.470 4.470 11 H 0.078 0.922 12 C -0.279 4.279 13 N -0.587 5.587 14 Si 0.941 3.059 15 H -0.217 1.217 16 H -0.207 1.207 17 H -0.199 1.199 18 H 0.051 0.949 19 H 0.097 0.903 20 H 0.066 0.934 21 H 0.087 0.913 22 H 0.117 0.883 23 H 0.160 0.840 24 H 0.170 0.830 25 H 0.023 0.977 26 H 0.028 0.972 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.835 -1.970 -6.786 8.562 hybrid contribution -0.709 -0.040 -1.370 1.543 sum -5.544 -2.010 -8.156 10.065 Atomic orbital electron populations 1.22022 0.95820 1.01047 1.00926 1.21215 0.94404 0.94240 0.86955 0.96513 1.22565 1.01359 0.93991 0.96296 1.22338 0.92515 0.95282 0.92736 0.93455 1.58499 1.42754 1.29571 1.06392 1.21311 0.93307 0.89264 0.92804 1.44787 1.59450 1.28705 1.01563 1.19965 1.09678 1.34067 0.83324 0.92235 1.27241 0.93597 1.00216 1.06868 1.70890 1.12026 1.51349 1.24425 0.82844 0.74599 0.77268 0.71236 1.21720 1.20680 1.19859 0.94856 0.90323 0.93425 0.91291 0.88275 0.84014 0.83016 0.97718 0.97206 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 9.11 71.98 0.66 -4.39 15 2 C 0.14 5.88 3.74 45.34 0.17 6.05 15 3 H 0.02 0.77 8.14 -2.38 -0.02 0.75 15 4 C -0.10 -3.55 6.19 31.78 0.20 -3.35 15 5 C 0.08 3.05 4.18 46.31 0.19 3.24 15 6 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 7 N -0.84 -24.88 9.37 -162.94 -1.53 -26.40 15 8 C 0.16 7.95 5.08 86.85 0.44 8.39 15 9 N -0.62 -32.92 3.01 -668.28 -2.01 -34.93 15 10 C -0.34 -20.11 9.62 84.03 0.81 -19.30 15 11 H 0.06 3.47 7.50 -2.91 -0.02 3.44 15 12 C -0.08 -4.99 5.10 84.86 0.43 -4.55 15 13 N -0.94 -60.71 13.01 21.65 0.28 -60.42 15 14 Si 1.12 52.81 30.00 68.60 2.06 54.87 15 15 H -0.29 -13.94 7.11 99.48 0.71 -13.24 15 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 18 H 0.03 1.30 7.60 -2.39 -0.02 1.28 15 19 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.10 2.63 7.84 -2.39 -0.02 2.61 15 23 H 0.35 9.62 9.07 -89.69 -0.81 8.81 15 24 H 0.36 7.99 9.08 -89.69 -0.81 7.18 15 25 H 0.01 0.28 6.80 -2.39 -0.02 0.26 15 26 H 0.01 0.53 8.08 -2.38 -0.02 0.51 15 27 H 0.25 16.70 6.18 -92.71 -0.57 16.13 15 Total: -1.00 -69.58 222.57 1.43 -68.15 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.27 Total: 12.66 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 2.90 Total: -13.92 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -3.25 Total: -121.75 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 2.06 Total: 54.87 kcal Total: -69.58 1.43 -68.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575589582.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.320 kcal (2) G-P(sol) polarization free energy of solvation -69.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds