Wall clock time and date at job start Mon Mar 30 2020 20:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86802 * 119.99595 * 2 1 4 4 H 1.48499 * 109.47224 * 270.93282 * 3 2 1 5 5 H 1.48497 * 109.47320 * 30.93917 * 3 2 1 6 6 H 1.48500 * 109.46696 * 150.93916 * 3 2 1 7 7 C 1.40302 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00119 * 344.57892 * 7 2 1 9 9 C 1.40071 * 120.00263 * 164.58239 * 7 2 1 10 10 C 1.37970 * 125.68618 * 340.20345 * 9 7 2 11 11 C 1.45909 * 106.26655 * 176.27092 * 10 9 7 12 12 H 1.08998 * 105.25431 * 288.29253 * 11 10 9 13 13 C 1.45840 * 134.30279 * 157.22800 * 11 10 9 14 14 C 1.33883 * 107.00142 * 203.92029 * 13 11 10 15 15 C 1.53668 * 109.24426 * 2.54627 * 14 13 11 16 16 C 1.53701 * 100.45613 * 30.25615 * 15 14 13 17 17 H 1.09006 * 114.65747 * 76.67322 * 16 15 14 18 18 C 1.53613 * 118.90003 * 218.59030 * 16 15 14 19 19 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 20 20 H 1.07993 * 126.86622 * 356.30863 * 10 9 7 21 21 H 1.07994 * 126.49718 * 23.93967 * 13 11 10 22 22 H 1.08001 * 125.37503 * 182.58538 * 14 13 11 23 23 H 1.08996 * 111.21756 * 148.06221 * 15 14 13 24 24 H 1.09006 * 111.21868 * 272.41015 * 15 14 13 25 25 H 1.08994 * 111.17264 * 259.43865 * 18 16 15 26 26 H 1.09005 * 111.16925 * 23.71208 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4685 2.0579 -1.3999 5 1 1.4483 2.6469 0.7198 6 1 3.5481 1.4346 0.6801 7 6 2.0084 -1.2150 -0.0005 8 1 1.4976 -2.1336 0.2478 9 6 3.3713 -1.2368 -0.3230 10 6 4.0507 -0.2546 -1.0139 11 6 5.4513 -0.6630 -1.0336 12 1 5.8055 -0.5219 -0.0124 13 6 6.5901 -0.3554 -1.8911 14 6 7.4523 -1.3733 -1.7771 15 6 6.8513 -2.4451 -0.8542 16 6 5.3531 -2.2449 -1.1329 17 1 5.0068 -2.6615 -2.0788 18 6 4.3594 -2.3591 0.0330 19 1 -0.4850 0.8401 0.0004 20 1 3.6300 0.6384 -1.4520 21 1 6.7146 0.5265 -2.5019 22 1 8.4178 -1.4317 -2.2574 23 1 7.1767 -3.4438 -1.1453 24 1 7.0892 -2.2446 0.1905 25 1 3.8664 -3.3312 0.0362 26 1 4.8486 -2.1649 0.9876 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075537607.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:23 Heat of formation + Delta-G solvation = 54.109097 kcal Electronic energy + Delta-G solvation = -10091.362708 eV Core-core repulsion = 8329.257625 eV Total energy + Delta-G solvation = -1762.105084 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 176.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.64618 -34.50959 -32.56686 -28.87544 -27.55148 -24.87268 -22.99840 -19.52700 -18.94560 -17.89242 -15.98666 -15.30216 -14.58363 -14.24583 -13.02108 -12.60786 -12.30396 -11.80273 -11.42477 -11.18768 -10.86357 -10.81122 -10.51045 -10.27467 -9.72525 -9.46208 -9.11733 -8.90246 -8.16732 -7.25679 -6.80458 -4.30045 2.65689 3.15739 3.32332 3.46318 3.65867 4.20569 5.01708 5.22835 5.47672 5.64165 5.80305 6.04858 6.10632 6.22989 6.37859 6.46051 6.70671 6.71471 6.84802 6.91270 7.10881 7.17860 7.40259 7.60291 7.95361 8.01102 8.56702 8.93380 9.02346 10.21590 Molecular weight = 176.09amu Principal moments of inertia in cm(-1) A = 0.069374 B = 0.015093 C = 0.012964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.511635 B = 1854.745589 C = 2159.283113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.086 3.914 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.307 1.307 6 H -0.243 1.243 7 C -0.433 4.433 8 H 0.082 0.918 9 C 0.043 3.957 10 C -0.431 4.431 11 C -0.014 4.014 12 H 0.034 0.966 13 C -0.122 4.122 14 C -0.210 4.210 15 C -0.083 4.083 16 C -0.113 4.113 17 H 0.092 0.908 18 C -0.077 4.077 19 H 0.283 0.717 20 H 0.100 0.900 21 H 0.118 0.882 22 H 0.116 0.884 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 -0.874 -1.007 9.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.133 4.133 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.236 1.236 6 H -0.166 1.166 7 C -0.462 4.462 8 H 0.100 0.900 9 C 0.040 3.960 10 C -0.453 4.453 11 C -0.031 4.031 12 H 0.051 0.949 13 C -0.140 4.140 14 C -0.228 4.228 15 C -0.120 4.120 16 C -0.132 4.132 17 H 0.110 0.890 18 C -0.114 4.114 19 H 0.094 0.906 20 H 0.118 0.882 21 H 0.135 0.865 22 H 0.134 0.866 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.692 -0.833 -0.938 8.782 hybrid contribution 0.271 0.887 -0.069 0.930 sum 8.963 0.054 -1.007 9.020 Atomic orbital electron populations 1.69623 1.08249 1.30149 1.36366 1.26210 0.94663 1.02005 0.90388 0.85966 0.80223 0.78766 0.78901 1.20266 1.23595 1.16607 1.18975 0.92305 0.95355 1.39534 0.89978 1.20384 0.91980 0.92181 0.91420 1.21562 0.93097 1.06902 1.23708 1.18901 0.93399 0.94389 0.96427 0.94879 1.22941 0.96170 0.97556 0.97319 1.24629 0.99318 0.97059 1.01744 1.21535 0.95492 0.96755 0.98186 1.23980 0.92465 0.97780 0.98959 0.88965 1.21459 0.95714 0.98101 0.96105 0.90646 0.88199 0.86450 0.86596 0.92670 0.91152 0.93000 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.89 13.92 55.57 0.77 -22.12 15 2 C 0.09 2.37 5.51 -17.26 -0.10 2.27 15 3 Si 0.93 22.78 24.54 -169.99 -4.17 18.61 15 4 H -0.28 -6.74 6.65 56.52 0.38 -6.37 15 5 H -0.31 -7.21 7.11 56.52 0.40 -6.81 15 6 H -0.24 -6.02 6.58 56.52 0.37 -5.65 15 7 C -0.43 -12.18 9.92 -38.12 -0.38 -12.56 15 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 15 9 C 0.04 1.11 5.52 -102.51 -0.57 0.54 15 10 C -0.43 -10.97 7.93 -36.61 -0.29 -11.26 15 11 C -0.01 -0.30 2.71 -94.15 -0.26 -0.56 15 12 H 0.03 0.76 6.73 -51.93 -0.35 0.42 15 13 C -0.12 -2.27 10.80 -38.07 -0.41 -2.68 15 14 C -0.21 -3.44 10.96 -34.34 -0.38 -3.81 15 15 C -0.08 -1.38 6.37 -26.02 -0.17 -1.54 15 16 C -0.11 -2.27 4.23 -86.72 -0.37 -2.64 15 17 H 0.09 1.86 8.14 -51.93 -0.42 1.44 15 18 C -0.08 -1.66 6.29 -26.04 -0.16 -1.83 15 19 H 0.28 7.21 8.29 -40.82 -0.34 6.87 15 20 H 0.10 2.64 4.39 -52.49 -0.23 2.41 15 21 H 0.12 1.98 8.06 -52.49 -0.42 1.55 15 22 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.07 1.15 7.86 -51.93 -0.41 0.74 15 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.06 1.33 7.84 -51.93 -0.41 0.93 15 LS Contribution 212.74 15.07 3.21 3.21 Total: -1.00 -28.30 212.74 -6.38 -34.68 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -3.12 Total: -0.32 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: -3.07 Total: -34.06 kcal Atomic # 7 Polarization: -22.89 SS G_CDS: 0.77 Total: -22.12 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.17 Total: 18.61 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -28.30 -6.38 -34.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075537607.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.787 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds