Wall clock time and date at job start Mon Mar 30 2020 20:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30502 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48497 * 109.47018 * 274.97538 * 3 2 1 5 5 H 1.48494 * 109.47099 * 34.97394 * 3 2 1 6 6 H 1.48505 * 109.47418 * 154.97411 * 3 2 1 7 7 C 1.40588 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99899 * 185.98977 * 7 2 1 9 9 C 1.39425 * 120.00460 * 5.99362 * 7 2 1 10 10 N 1.38048 * 127.12550 * 352.50663 * 9 7 2 11 11 H 0.97003 * 126.36124 * 0.02562 * 10 9 7 12 12 C 1.35640 * 107.28301 * 180.02562 * 10 9 7 13 13 N 1.30621 * 109.99825 * 0.02562 * 12 10 9 14 14 C 1.34151 * 109.87688 * 359.97438 * 13 12 10 15 15 C 1.47116 * 126.44784 * 180.26606 * 14 13 12 16 16 N 1.34780 * 120.00290 * 359.68179 * 15 14 13 17 17 O 1.21660 * 120.00227 * 179.68990 * 15 14 13 18 18 H 0.96993 * 120.00382 * 359.97438 * 1 2 3 19 19 H 1.08004 * 125.00144 * 180.02562 * 12 10 9 20 20 H 0.97005 * 119.99721 * 0.02562 * 16 15 14 21 21 H 0.96996 * 120.00675 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.3813 2.1071 -1.3948 5 1 1.4930 2.6200 0.8025 6 1 3.5852 1.4122 0.5923 7 6 2.0080 -1.2175 0.0005 8 1 3.0836 -1.2200 0.0982 9 6 1.3166 -2.4218 -0.1250 10 7 -0.0520 -2.6019 -0.1145 11 1 -0.7227 -1.9077 -0.0177 12 6 -0.2849 -3.9297 -0.2646 13 7 0.8473 -4.5732 -0.3655 14 6 1.8711 -3.7098 -0.2882 15 6 3.3022 -4.0420 -0.3652 16 7 3.6891 -5.3234 -0.5227 17 8 4.1365 -3.1600 -0.2865 18 1 -0.4850 0.8400 0.0004 19 1 -1.2626 -4.3875 -0.2960 20 1 3.0239 -6.0266 -0.5857 21 1 4.6327 -5.5424 -0.5739 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033494607.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:37 Heat of formation + Delta-G solvation = -37.298593 kcal Electronic energy + Delta-G solvation = -10509.413379 eV Core-core repulsion = 8383.922255 eV Total energy + Delta-G solvation = -2125.491124 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.82440 -39.40690 -35.91232 -34.22212 -32.32601 -31.04781 -27.22970 -23.76751 -22.15567 -20.49628 -19.97558 -17.99292 -17.57053 -16.81038 -16.15206 -15.67176 -14.74164 -14.47416 -14.43879 -14.21418 -13.57966 -13.06817 -12.65094 -12.03634 -11.45088 -10.86933 -10.47618 -10.40738 -10.30342 -9.28178 -9.01829 -6.52961 1.02039 1.36984 1.51763 1.60140 2.02146 2.16955 2.81561 2.93870 3.33815 3.39646 4.18625 4.82148 5.04368 5.14318 5.59240 5.76017 6.21311 6.44718 6.51395 6.65473 6.79927 7.44032 7.66316 7.87654 8.06274 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.046756 B = 0.016890 C = 0.012473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.712598 B = 1657.372954 C = 2244.248768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.036 3.964 3 Si 1.003 2.997 4 H -0.260 1.260 5 H -0.253 1.253 6 H -0.267 1.267 7 C -0.452 4.452 8 H 0.096 0.904 9 C 0.231 3.769 10 N -0.590 5.590 11 H 0.427 0.573 12 C 0.106 3.894 13 N -0.476 5.476 14 C -0.267 4.267 15 C 0.604 3.396 16 N -0.839 5.839 17 O -0.612 6.612 18 H 0.306 0.694 19 H 0.226 0.774 20 H 0.410 0.590 21 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 -0.837 -0.287 1.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.180 4.180 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.176 1.176 6 H -0.192 1.192 7 C -0.486 4.486 8 H 0.114 0.886 9 C 0.111 3.889 10 N -0.209 5.209 11 H 0.274 0.726 12 C -0.176 4.176 13 N -0.197 5.197 14 C -0.391 4.391 15 C 0.396 3.604 16 N -0.401 5.401 17 O -0.496 6.496 18 H 0.118 0.882 19 H 0.242 0.758 20 H 0.239 0.761 21 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.440 -1.035 -0.330 1.803 hybrid contribution -0.179 1.147 0.060 1.162 sum -1.618 0.112 -0.270 1.644 Atomic orbital electron populations 1.68783 1.08784 1.32483 1.36169 1.27040 0.95842 1.05084 0.90033 0.84840 0.78690 0.74442 0.79730 1.18424 1.17638 1.19154 1.19444 0.96513 0.89232 1.43379 0.88623 1.19069 0.82959 0.94477 0.92376 1.43758 1.07038 1.09418 1.60714 0.72618 1.24994 0.99179 0.81394 1.12057 1.69345 0.97916 1.34137 1.18290 1.20276 0.92563 0.90877 1.35377 1.16982 0.86381 0.82664 0.74352 1.43249 1.11529 1.07542 1.77805 1.90634 1.54242 1.48975 1.55777 0.88182 0.75810 0.76051 0.76667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -38.63 10.82 21.94 0.24 -38.39 14 2 C 0.04 1.76 5.50 85.46 0.47 2.23 14 3 Si 1.00 37.95 29.57 68.60 2.03 39.97 14 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 14 5 H -0.25 -8.55 7.11 99.48 0.71 -7.85 14 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 14 7 C -0.45 -25.35 8.93 23.13 0.21 -25.15 14 8 H 0.10 5.72 6.20 -2.91 -0.02 5.70 14 9 C 0.23 12.93 6.76 39.17 0.26 13.19 14 10 N -0.59 -28.68 5.82 -190.10 -1.11 -29.79 14 11 H 0.43 19.69 6.49 -92.71 -0.60 19.09 14 12 C 0.11 4.64 12.98 180.04 2.34 6.97 14 13 N -0.48 -22.98 10.89 -186.34 -2.03 -25.01 14 14 C -0.27 -14.45 7.10 41.84 0.30 -14.16 14 15 C 0.60 30.94 8.08 86.57 0.70 31.64 14 16 N -0.84 -31.97 8.87 -176.07 -1.56 -33.54 14 17 O -0.61 -35.05 15.81 -4.22 -0.07 -35.11 14 18 H 0.31 12.44 8.29 -92.71 -0.77 11.67 14 19 H 0.23 7.21 8.06 -2.91 -0.02 7.19 14 20 H 0.41 14.08 8.55 -92.70 -0.79 13.28 14 21 H 0.40 12.76 8.93 -92.71 -0.83 11.93 14 Total: -1.00 -65.67 198.94 0.86 -64.81 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: -0.91 Total: 42.33 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 4.27 Total: 14.73 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -4.46 Total: -126.72 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.07 Total: -35.11 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.97 kcal Total: -65.67 0.86 -64.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033494607.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.509 kcal (2) G-P(sol) polarization free energy of solvation -65.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds