Wall clock time and date at job start Mon Mar 30 2020 20:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47247 * 2 1 4 4 C 1.50706 * 109.46874 * 119.99617 * 2 1 3 5 5 H 1.07997 * 119.99819 * 120.00406 * 4 2 1 6 6 C 1.37879 * 120.00093 * 299.99979 * 4 2 1 7 7 N 1.31516 * 119.99735 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00008 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47154 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47530 * 120.00203 * 8 6 4 11 11 H 1.48504 * 109.47113 * 240.00116 * 8 6 4 12 12 C 1.52996 * 109.47706 * 239.99604 * 2 1 3 13 13 H 1.09002 * 115.56136 * 280.36483 * 12 2 1 14 14 C 1.53118 * 117.51859 * 134.61609 * 12 2 1 15 15 C 1.52468 * 117.51147 * 66.08642 * 12 2 1 16 16 C 1.53253 * 128.58265 * 349.85854 * 15 12 2 17 17 C 1.53889 * 86.88124 * 194.88437 * 16 15 12 18 18 C 1.53247 * 128.58912 * 225.05479 * 15 12 2 19 19 H 1.08998 * 109.46688 * 173.78115 * 1 2 3 20 20 H 1.09000 * 109.46928 * 293.78348 * 1 2 3 21 21 H 1.09001 * 109.46700 * 53.78302 * 1 2 3 22 22 H 0.97002 * 119.99909 * 179.97438 * 7 6 4 23 23 H 1.09007 * 117.51024 * 0.02562 * 14 12 2 24 24 H 1.08997 * 117.51347 * 145.10561 * 14 12 2 25 25 H 1.09004 * 113.64887 * 309.37982 * 16 15 12 26 26 H 1.09000 * 113.65052 * 80.38969 * 16 15 12 27 27 H 1.09006 * 113.58902 * 270.39007 * 17 16 15 28 28 H 1.09000 * 113.58948 * 139.57452 * 17 16 15 29 29 H 1.09006 * 113.64584 * 279.61429 * 18 15 12 30 30 H 1.09000 * 113.65010 * 50.52551 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.1473 -2.2862 3.6040 10 1 3.1471 -0.1856 4.8162 11 1 1.1676 -1.5863 4.8166 12 6 2.0401 -0.7213 -1.2491 13 1 2.0302 -1.8102 -1.2005 14 6 3.1752 -0.0587 -2.0347 15 6 1.7582 -0.0742 -2.6006 16 6 0.8427 1.1128 -2.9195 17 6 0.9471 0.6887 -4.3951 18 6 1.2504 -0.7322 -3.8880 19 1 -0.3633 -1.0216 -0.1113 20 1 -0.3633 0.4144 0.9404 21 1 -0.3633 0.6072 -0.8291 22 1 0.7088 1.1617 3.4843 23 1 3.5587 0.8909 -1.6611 24 1 3.9115 -0.7118 -2.5031 25 1 -0.1611 1.0141 -2.5062 26 1 1.2948 2.0822 -2.7103 27 1 1.7811 1.1504 -4.9237 28 1 0.0056 0.7661 -4.9389 29 1 2.0293 -1.2419 -4.4552 30 1 0.3610 -1.3457 -3.7442 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009549.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:56 Heat of formation + Delta-G solvation = 31.750797 kcal Electronic energy + Delta-G solvation = -10887.728905 eV Core-core repulsion = 9070.031336 eV Total energy + Delta-G solvation = -1817.697569 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98849 -34.59230 -32.39525 -29.51369 -25.40579 -24.87194 -22.57313 -21.99916 -19.21292 -17.52250 -16.27574 -14.81440 -14.64368 -14.51322 -13.48599 -12.60794 -12.26571 -11.94280 -11.59482 -11.17451 -10.99925 -10.84911 -10.73828 -10.65068 -10.21217 -10.03000 -9.88038 -9.43827 -8.95859 -8.82464 -8.35090 -8.18815 -5.91295 -3.97260 3.33022 3.40839 3.45118 4.45691 4.54410 5.05592 5.16167 5.28500 5.37768 5.54649 5.68715 5.96200 6.08392 6.15750 6.19852 6.33328 6.39751 6.63753 6.74370 6.83522 6.90959 6.96105 7.12503 7.34436 7.50745 7.81298 8.08431 8.24993 8.56136 9.06451 9.66700 11.14036 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.078105 B = 0.010757 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.404465 B = 2602.221760 C = 2769.738300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.025 0.975 4 C -0.505 4.505 5 H 0.054 0.946 6 C 0.058 3.942 7 N -0.892 5.892 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.097 4.097 13 H 0.087 0.913 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.097 4.097 17 C -0.139 4.139 18 C -0.101 4.101 19 H 0.020 0.980 20 H 0.081 0.919 21 H 0.014 0.986 22 H 0.258 0.742 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -0.849 -9.281 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.055 3.945 3 H 0.043 0.957 4 C -0.544 4.544 5 H 0.073 0.927 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.116 4.116 13 H 0.105 0.895 14 C -0.193 4.193 15 C -0.172 4.172 16 C -0.134 4.134 17 C -0.176 4.176 18 C -0.138 4.138 19 H 0.039 0.961 20 H 0.099 0.901 21 H 0.033 0.967 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.164 -0.737 -9.146 9.177 hybrid contribution 0.400 -0.480 0.906 1.100 sum 0.563 -1.217 -8.240 8.348 Atomic orbital electron populations 1.21825 0.98676 0.97913 1.00993 1.18252 0.92340 0.94911 0.89015 0.95734 1.21258 1.30410 1.12132 0.90561 0.92746 1.24969 0.95297 0.95087 0.98903 1.69906 1.37161 1.23093 1.22993 0.86582 0.78610 0.79729 0.83345 1.19846 1.21133 1.21138 1.22583 0.98921 0.98210 0.91850 0.89507 1.22808 0.89876 1.02584 1.04008 1.22233 0.98870 0.99915 0.96168 1.22454 0.99660 0.96864 0.94416 1.22754 1.00698 0.97333 0.96808 1.22404 1.00182 0.95896 0.95310 0.96127 0.90059 0.96694 0.93225 0.89292 0.90240 0.89525 0.92144 0.90822 0.92168 0.92440 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.85 37.16 0.33 -3.06 16 2 C 0.07 1.87 2.25 -91.77 -0.21 1.67 16 3 H 0.02 0.69 7.96 -51.93 -0.41 0.27 16 4 C -0.51 -14.21 8.56 -34.44 -0.29 -14.50 16 5 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.89 -26.03 11.29 55.43 0.63 -25.41 16 8 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 C -0.10 -2.12 5.00 -90.83 -0.45 -2.57 16 13 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 14 C -0.16 -2.97 10.18 -26.88 -0.27 -3.24 16 15 C -0.17 -3.15 2.79 -154.73 -0.43 -3.58 16 16 C -0.10 -1.65 7.19 -26.14 -0.19 -1.84 16 17 C -0.14 -1.95 8.08 -25.81 -0.21 -2.15 16 18 C -0.10 -1.54 8.10 -26.14 -0.21 -1.75 16 19 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 20 H 0.08 2.23 5.93 -51.93 -0.31 1.92 16 21 H 0.01 0.32 5.26 -51.93 -0.27 0.05 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.09 1.73 8.09 -51.92 -0.42 1.31 16 24 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.09 1.52 6.11 -51.93 -0.32 1.20 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 242.98 15.07 3.66 3.66 Total: -1.00 -28.59 242.98 -7.42 -36.02 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.65 Total: -1.44 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: -2.03 Total: -29.49 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.63 Total: -25.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.59 -7.42 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009549.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.768 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds