Wall clock time and date at job start Mon Mar 30 2020 20:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.64100 * 59.29680 * 9 7 2 11 11 C 1.55910 * 110.72536 * 296.14213 * 9 7 2 12 12 N 1.50152 * 106.31914 * 247.44508 * 11 9 7 13 13 C 1.44508 * 102.98035 * 26.98645 * 12 11 9 14 14 H 1.08999 * 109.96920 * 67.14073 * 13 12 11 15 15 C 1.51136 * 125.52546 * 202.03453 * 13 12 11 16 16 C 1.56270 * 101.83135 * 156.17551 * 15 13 12 17 17 C 1.55795 * 105.87272 * 335.13417 * 16 15 13 18 18 C 1.50482 * 104.44029 * 352.86312 * 17 16 15 19 19 H 1.08994 * 109.69237 * 278.70010 * 18 17 16 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09002 * 110.08517 * 6.65473 * 11 9 7 22 22 H 1.08995 * 110.08505 * 128.17061 * 11 9 7 23 23 H 1.00908 * 110.99920 * 268.14101 * 12 11 9 24 24 H 1.08997 * 110.95659 * 274.31474 * 15 13 12 25 25 H 1.09004 * 110.95433 * 38.04283 * 15 13 12 26 26 H 1.08995 * 110.16699 * 94.23728 * 16 15 13 27 27 H 1.09003 * 110.16831 * 215.95598 * 16 15 13 28 28 H 1.08998 * 110.47037 * 111.68597 * 17 16 15 29 29 H 1.09004 * 110.46606 * 234.14551 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6083 -2.5718 -0.8768 11 6 0.4183 -2.6555 1.3093 12 7 1.0436 -3.7858 2.0748 13 6 2.4169 -3.7615 1.6255 14 1 2.9062 -2.8515 1.9728 15 6 3.3822 -4.9227 1.6886 16 6 4.4018 -4.5534 0.5634 17 6 3.6285 -3.6317 -0.4264 18 6 2.2055 -3.6670 0.0617 19 1 1.7146 -4.5694 -0.3026 20 1 -0.4850 -0.8401 -0.0004 21 1 0.4642 -1.7368 1.8942 22 1 -0.6175 -2.8937 1.0676 23 1 0.6037 -4.6646 1.8458 24 1 3.8737 -4.9687 2.6604 25 1 2.8771 -5.8622 1.4640 26 1 5.2524 -4.0198 0.9874 27 1 4.7407 -5.4548 0.0527 28 1 4.0206 -2.6155 -0.3864 29 1 3.6921 -4.0241 -1.4414 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260571357.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:48 Heat of formation + Delta-G solvation = -22.580303 kcal Electronic energy + Delta-G solvation = -11433.613592 eV Core-core repulsion = 9548.134138 eV Total energy + Delta-G solvation = -1885.479454 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.21258 -36.01694 -34.57830 -31.46880 -27.87844 -27.49025 -26.08400 -22.30101 -21.49823 -20.78027 -18.32598 -17.18305 -16.66175 -15.73132 -15.38445 -15.04241 -14.35010 -14.13425 -13.58938 -13.13922 -12.83521 -12.61797 -12.50775 -12.05414 -11.95574 -11.79681 -11.42714 -11.29557 -11.07318 -10.49652 -10.32829 -9.40849 -8.57491 -6.27718 1.51658 1.59980 1.76623 2.57380 2.96850 3.22144 3.85562 3.92552 4.00170 4.30612 4.44793 4.53339 4.55157 4.66525 4.74918 4.82259 4.99322 5.05819 5.15433 5.23115 5.36115 5.42594 5.48347 5.54250 5.78396 6.17101 6.26615 6.62399 6.69264 7.51203 8.81871 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.050072 B = 0.015467 C = 0.013246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.064947 B = 1809.832751 C = 2113.314232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.035 4.035 3 Si 1.112 2.888 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.589 4.589 8 H 0.054 0.946 9 C 0.008 3.992 10 H -0.012 1.012 11 C 0.058 3.942 12 N -0.654 5.654 13 C 0.063 3.937 14 H 0.058 0.942 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.108 4.108 18 C -0.133 4.133 19 H 0.052 0.948 20 H 0.259 0.741 21 H 0.044 0.956 22 H 0.041 0.959 23 H 0.333 0.667 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -8.393 1.524 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.233 4.233 3 Si 0.935 3.065 4 H -0.203 1.203 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.627 4.627 8 H 0.072 0.928 9 C -0.012 4.012 10 H 0.006 0.994 11 C -0.071 4.071 12 N -0.280 5.280 13 C -0.048 4.048 14 H 0.076 0.924 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.145 4.145 18 C -0.153 4.153 19 H 0.070 0.930 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.149 0.851 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.094 -6.429 2.222 9.828 hybrid contribution -0.491 -1.653 -1.159 2.078 sum 6.602 -8.082 1.063 10.490 Atomic orbital electron populations 1.70874 1.07809 1.30154 1.48901 1.27145 0.96692 1.06248 0.93203 0.82980 0.74292 0.71789 0.77434 1.20349 1.19600 1.21121 1.22262 0.94305 0.92089 1.54015 0.92801 1.19398 0.94141 0.95295 0.92379 0.99416 1.23633 0.96013 0.93305 0.94159 1.62665 1.02955 1.06946 1.55411 1.22591 0.90538 0.99363 0.92332 0.92359 1.21871 0.95793 0.96253 0.99639 1.22847 0.97419 0.99349 0.95048 1.21499 0.94346 1.00046 0.98651 1.22547 0.96346 0.96887 0.99539 0.93004 0.93102 0.93697 0.94066 0.85099 0.90068 0.90285 0.91048 0.89509 0.92770 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 13.26 21.45 0.28 -57.43 15 2 C -0.04 -2.01 5.11 84.65 0.43 -1.58 15 3 Si 1.11 51.06 29.90 68.60 2.05 53.11 15 4 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 15 7 C -0.59 -32.95 7.75 25.60 0.20 -32.75 15 8 H 0.05 2.97 5.73 -2.91 -0.02 2.95 15 9 C 0.01 0.39 2.49 -11.20 -0.03 0.36 15 10 H -0.01 -0.69 8.00 -2.39 -0.02 -0.71 15 11 C 0.06 2.83 5.77 86.67 0.50 3.33 15 12 N -0.65 -26.26 7.57 -477.24 -3.61 -29.87 15 13 C 0.06 2.42 3.23 46.57 0.15 2.57 15 14 H 0.06 2.63 7.73 -2.39 -0.02 2.61 15 15 C -0.10 -2.74 6.75 31.12 0.21 -2.53 15 16 C -0.11 -2.95 6.94 32.70 0.23 -2.72 15 17 C -0.11 -3.88 6.38 30.75 0.20 -3.69 15 18 C -0.13 -5.49 2.70 -10.46 -0.03 -5.52 15 19 H 0.05 2.00 8.14 -2.39 -0.02 1.99 15 20 H 0.26 15.97 6.26 -92.71 -0.58 15.39 15 21 H 0.04 2.50 7.22 -2.39 -0.02 2.48 15 22 H 0.04 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.33 11.56 8.84 -89.69 -0.79 10.76 15 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.08 1.95 8.14 -2.38 -0.02 1.93 15 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 28 H 0.05 2.22 5.95 -2.39 -0.01 2.21 15 29 H 0.06 1.96 8.14 -2.38 -0.02 1.94 15 Total: -1.00 -63.31 225.88 1.11 -62.20 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.53 Total: 14.51 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 1.86 Total: -42.52 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -3.33 Total: -87.31 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -63.31 1.11 -62.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260571357.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.620 kcal (2) G-P(sol) polarization free energy of solvation -63.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds