Wall clock time and date at job start Mon Mar 30 2020 20:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34947 * 126.03868 * 2 1 4 4 C 1.35315 * 107.74836 * 179.75122 * 3 2 1 5 5 C 1.39869 * 107.91916 * 0.39237 * 4 3 2 6 6 C 1.50700 * 125.89907 * 179.85992 * 5 4 3 7 7 H 1.09004 * 109.47210 * 4.72115 * 6 5 4 8 8 N 1.46899 * 109.47483 * 244.71785 * 6 5 4 9 9 C 1.50702 * 109.46869 * 124.71822 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 N 1.30837 * 108.20134 * 359.60210 * 5 4 3 18 18 H 1.09004 * 109.47162 * 270.02025 * 1 2 3 19 19 H 1.08995 * 109.47111 * 30.02433 * 1 2 3 20 20 H 1.09000 * 109.47047 * 150.02350 * 1 2 3 21 21 H 1.08001 * 126.12725 * 0.02562 * 3 2 1 22 22 H 1.08002 * 126.04049 * 180.27882 * 4 3 2 23 23 H 1.00903 * 111.00048 * 300.00270 * 8 6 5 24 24 H 1.00904 * 110.99882 * 63.95460 * 8 6 5 25 25 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0056 5 6 3.5346 -0.7321 0.0000 6 6 4.7496 -1.6236 0.0004 7 1 5.6482 -1.0131 0.0903 8 7 4.7986 -2.3852 -1.2548 9 6 4.6721 -2.5778 1.1643 10 1 3.8273 -2.5425 1.8362 11 6 5.6767 -3.5001 1.3677 12 7 6.7052 -3.5433 0.5492 13 14 5.5768 -4.6879 2.8059 14 1 4.3502 -5.5155 2.6801 15 1 6.7717 -5.5697 2.8035 16 1 5.5294 -3.9227 4.0777 17 7 2.2891 -1.1327 0.0000 18 1 -0.3634 0.0004 1.0277 19 1 -0.3633 0.8897 -0.5142 20 1 -0.3633 -0.8902 -0.5135 21 1 1.9281 2.1193 0.0004 22 1 4.4210 1.2963 0.0113 23 1 3.9759 -2.9596 -1.3616 24 1 4.9157 -1.7706 -2.0464 25 1 7.4121 -4.1920 0.6926 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635551.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:02 Heat of formation + Delta-G solvation = 55.508139 kcal Electronic energy + Delta-G solvation = -10594.032532 eV Core-core repulsion = 8608.398904 eV Total energy + Delta-G solvation = -1985.633628 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.091 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.87654 -36.59635 -34.02243 -32.75949 -30.76335 -28.45559 -27.09578 -24.03937 -21.83974 -20.38155 -18.35249 -17.76186 -16.55713 -16.16018 -15.99421 -15.06738 -14.55352 -14.39610 -13.90079 -13.44307 -13.24962 -13.07909 -12.70563 -12.58665 -11.92505 -11.51223 -11.09769 -10.52162 -10.03986 -9.37378 -8.94982 -7.97194 -6.16397 1.12901 1.42674 1.44909 1.52454 1.89750 2.04232 2.50042 3.27043 3.83389 4.12288 4.42548 4.46371 4.47325 4.68830 4.78848 5.03721 5.11548 5.49017 5.77262 5.83175 6.18775 6.38089 6.63051 6.99826 7.04619 7.27997 7.53833 9.07204 Molecular weight = 181.09amu Principal moments of inertia in cm(-1) A = 0.057543 B = 0.012010 C = 0.010921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.477890 B = 2330.806351 C = 2563.147158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.393 5.393 3 C 0.062 3.938 4 C -0.305 4.305 5 C 0.048 3.952 6 C 0.296 3.704 7 H 0.027 0.973 8 N -0.809 5.809 9 C -0.540 4.540 10 H 0.036 0.964 11 C 0.035 3.965 12 N -0.879 5.879 13 Si 0.950 3.050 14 H -0.278 1.278 15 H -0.278 1.278 16 H -0.273 1.273 17 N -0.333 5.333 18 H 0.079 0.921 19 H 0.122 0.878 20 H 0.081 0.919 21 H 0.220 0.780 22 H 0.149 0.851 23 H 0.321 0.679 24 H 0.310 0.690 25 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 9.103 -1.315 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.176 5.176 3 C -0.085 4.085 4 C -0.335 4.335 5 C -0.120 4.120 6 C 0.185 3.815 7 H 0.045 0.955 8 N -0.335 5.335 9 C -0.579 4.579 10 H 0.054 0.946 11 C -0.169 4.169 12 N -0.515 5.515 13 Si 0.776 3.224 14 H -0.204 1.204 15 H -0.203 1.203 16 H -0.199 1.199 17 N -0.156 5.156 18 H 0.098 0.902 19 H 0.140 0.860 20 H 0.099 0.901 21 H 0.236 0.764 22 H 0.166 0.834 23 H 0.132 0.868 24 H 0.121 0.879 25 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.740 7.668 -1.064 13.240 hybrid contribution -0.171 0.501 0.472 0.709 sum -10.911 8.169 -0.592 13.643 Atomic orbital electron populations 1.22108 0.72396 1.05688 1.04137 1.49077 1.07902 1.03708 1.56895 1.23057 0.90183 0.94744 1.00527 1.21779 0.98585 0.94128 1.18994 1.24179 0.94937 0.95828 0.97099 1.17387 0.86079 0.88835 0.89247 0.95479 1.59114 1.45368 1.26045 1.02996 1.21023 1.06343 1.19412 1.11103 0.94559 1.25659 0.94848 0.98363 0.98010 1.70206 1.09314 1.35183 1.36813 0.85780 0.77375 0.79119 0.80153 1.20384 1.20337 1.19872 1.77299 1.02339 1.08940 1.27020 0.90211 0.85972 0.90057 0.76366 0.83374 0.86806 0.87875 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.97 11.47 127.77 1.47 3.44 15 2 N -0.39 -13.07 4.01 -369.58 -1.48 -14.55 15 3 C 0.06 1.83 11.49 83.54 0.96 2.79 15 4 C -0.30 -11.74 10.72 21.99 0.24 -11.50 15 5 C 0.05 2.26 5.97 43.10 0.26 2.52 15 6 C 0.30 16.13 3.11 43.42 0.14 16.26 15 7 H 0.03 1.59 8.12 -2.38 -0.02 1.58 15 8 N -0.81 -41.78 8.52 -174.95 -1.49 -43.27 15 9 C -0.54 -32.25 8.69 25.60 0.22 -32.03 15 10 H 0.04 2.23 7.74 -2.91 -0.02 2.21 15 11 C 0.03 2.04 5.39 84.66 0.46 2.50 15 12 N -0.88 -53.43 12.76 21.45 0.27 -53.15 15 13 Si 0.95 46.18 29.54 68.60 2.03 48.21 15 14 H -0.28 -13.41 7.11 99.48 0.71 -12.71 15 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 15 16 H -0.27 -12.93 7.11 99.48 0.71 -12.22 15 17 N -0.33 -15.11 12.54 -47.38 -0.59 -15.71 15 18 H 0.08 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.12 1.43 8.14 -2.39 -0.02 1.41 15 20 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.22 3.77 8.06 -2.91 -0.02 3.75 15 22 H 0.15 5.19 8.06 -2.91 -0.02 5.16 15 23 H 0.32 16.53 8.98 -89.69 -0.81 15.73 15 24 H 0.31 14.26 9.06 -89.69 -0.81 13.45 15 25 H 0.26 14.83 8.31 -92.70 -0.77 14.06 15 Total: -1.00 -73.28 228.28 2.05 -71.23 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.42 Total: 23.26 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 3.73 Total: -16.02 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -3.29 Total: -126.68 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -73.28 2.05 -71.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635551.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.742 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds