Wall clock time and date at job start Mon Mar 30 2020 20:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47415 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47290 * 300.00171 * 3 2 1 6 6 H 1.48504 * 109.47173 * 59.99809 * 3 2 1 7 7 C 1.37881 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99969 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.76970 * 59.32684 * 9 7 2 11 11 C 1.53545 * 109.73575 * 298.65467 * 9 7 2 12 12 C 1.53538 * 108.62106 * 286.85318 * 11 9 7 13 13 C 1.53900 * 108.11123 * 313.49190 * 12 11 9 14 14 C 1.54048 * 111.18750 * 71.98862 * 13 12 11 15 15 C 1.53899 * 109.73862 * 179.97438 * 9 7 2 16 16 C 1.54283 * 110.85026 * 141.26374 * 15 9 7 17 17 H 0.96995 * 120.00560 * 0.02562 * 1 2 3 18 18 H 1.00901 * 110.99591 * 300.67188 * 10 9 7 19 19 H 1.00898 * 110.99578 * 64.62869 * 10 9 7 20 20 H 1.09003 * 109.61279 * 167.11273 * 11 9 7 21 21 H 1.09002 * 109.61316 * 46.59593 * 11 9 7 22 22 H 1.08997 * 109.73838 * 193.83770 * 12 11 9 23 23 H 1.09004 * 109.77292 * 73.16640 * 12 11 9 24 24 H 1.08995 * 114.70344 * 205.34163 * 13 12 11 25 25 H 1.09004 * 113.82454 * 165.63344 * 14 13 12 26 26 H 1.08994 * 113.82613 * 34.05381 * 14 13 12 27 27 H 1.08999 * 114.69982 * 274.31023 * 15 9 7 28 28 H 1.09001 * 113.85112 * 33.62429 * 16 15 9 29 29 H 1.09003 * 113.85456 * 165.15575 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 0.3923 -2.5761 -1.1911 11 6 0.3911 -2.6025 1.2661 12 6 1.3139 -2.8690 2.4640 13 6 2.2986 -3.9844 2.0706 14 6 3.3433 -3.4739 1.0601 15 6 2.2457 -3.6736 -0.0028 16 6 1.7424 -4.8203 0.8984 17 1 -0.4851 0.8400 -0.0004 18 1 -0.2683 -1.8137 -1.2100 19 1 0.9448 -2.5969 -2.0352 20 1 -0.3184 -3.4234 1.1611 21 1 -0.1475 -1.6675 1.4201 22 1 0.7212 -3.1871 3.3217 23 1 1.8653 -1.9625 2.7136 24 1 2.6967 -4.5569 2.9082 25 1 4.1995 -4.1375 0.9388 26 1 3.6276 -2.4323 1.2091 27 1 2.5968 -3.9721 -0.9905 28 1 0.6577 -4.9278 0.9103 29 1 2.2628 -5.7651 0.7415 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260981338.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:30 Heat of formation + Delta-G solvation = 18.218283 kcal Electronic energy + Delta-G solvation = -11701.522299 eV Core-core repulsion = 9817.812005 eV Total energy + Delta-G solvation = -1883.710294 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.80590 -33.93750 -30.91749 -29.94917 -26.43894 -25.35466 -23.84585 -21.01739 -19.84990 -17.15359 -15.45598 -15.27660 -14.98507 -13.99033 -13.37261 -12.80038 -12.75013 -11.68330 -11.52770 -11.11918 -10.98159 -10.69118 -10.53226 -10.39230 -9.96547 -9.94634 -9.64722 -8.95952 -8.89091 -8.75059 -8.35438 -7.03845 -5.96704 -4.13754 3.23755 3.33185 3.36831 4.37354 5.20571 5.47170 5.59150 5.64494 5.80917 6.20094 6.33838 6.42774 6.52277 6.60105 6.71318 6.79806 6.88685 7.05187 7.13834 7.17106 7.27161 7.45955 7.76427 7.85619 8.04821 8.32163 8.81348 9.09267 9.26951 9.58078 10.96838 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.052128 B = 0.017476 C = 0.016343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.009370 B = 1601.822400 C = 1712.849248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.252 3.748 10 N -0.850 5.850 11 C -0.100 4.100 12 C -0.091 4.091 13 C -0.111 4.111 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.142 4.142 17 H 0.261 0.739 18 H 0.354 0.646 19 H 0.309 0.691 20 H 0.032 0.968 21 H 0.086 0.914 22 H 0.039 0.961 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -4.095 1.975 5.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.161 3.839 10 N -0.380 5.380 11 C -0.138 4.138 12 C -0.128 4.128 13 C -0.129 4.129 14 C -0.178 4.178 15 C -0.103 4.103 16 C -0.180 4.180 17 H 0.072 0.928 18 H 0.170 0.830 19 H 0.118 0.882 20 H 0.050 0.950 21 H 0.105 0.895 22 H 0.058 0.942 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.265 -4.657 2.284 5.660 hybrid contribution 1.007 1.874 -0.218 2.139 sum 3.272 -2.783 2.066 4.766 Atomic orbital electron populations 1.69683 1.05662 1.26482 1.51416 1.24979 0.94862 0.98937 0.94886 0.86606 0.80214 0.84026 0.77538 1.19921 1.21166 1.21065 1.21962 0.93565 0.91348 1.49942 0.92434 1.18353 0.88044 0.89377 0.88168 1.59406 1.21492 1.53111 1.03944 1.21677 0.96925 1.01047 0.94180 1.21501 0.96822 0.96790 0.97736 1.22687 0.97591 0.97328 0.95301 1.23247 0.95511 1.01430 0.97562 1.22693 0.96405 0.95938 0.95218 1.23250 1.00645 0.96281 0.97795 0.92824 0.82967 0.88237 0.94973 0.89547 0.94221 0.91905 0.92230 0.92596 0.90164 0.92433 0.91399 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 9.63 55.43 0.53 -23.47 15 2 C 0.06 1.70 5.15 -17.82 -0.09 1.61 15 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.53 -13.81 6.96 -34.44 -0.24 -14.05 15 8 H 0.06 1.53 6.25 -52.49 -0.33 1.20 15 9 C 0.25 6.09 0.64 -132.00 -0.09 6.01 15 10 N -0.85 -20.53 8.89 0.42 0.00 -20.53 15 11 C -0.10 -2.38 4.67 -26.17 -0.12 -2.51 15 12 C -0.09 -1.91 5.82 -25.98 -0.15 -2.06 15 13 C -0.11 -2.14 5.05 -89.00 -0.45 -2.59 15 14 C -0.14 -2.81 6.98 -25.70 -0.18 -2.99 15 15 C -0.08 -1.81 4.27 -89.01 -0.38 -2.19 15 16 C -0.14 -2.77 7.25 -25.44 -0.18 -2.96 15 17 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 18 H 0.35 9.13 6.90 -39.29 -0.27 8.86 15 19 H 0.31 7.14 8.99 -39.29 -0.35 6.79 15 20 H 0.03 0.75 6.69 -51.93 -0.35 0.41 15 21 H 0.09 2.29 6.01 -51.93 -0.31 1.98 15 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.06 1.40 7.98 -51.93 -0.41 0.98 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 26 H 0.08 1.75 5.91 -51.93 -0.31 1.45 15 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 28 H 0.07 1.38 6.34 -51.93 -0.33 1.05 15 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 220.27 15.07 3.32 3.32 Total: -1.00 -26.22 220.27 -6.96 -33.17 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -3.91 Total: 13.43 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.88 Total: -21.72 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.54 Total: -44.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -26.22 -6.96 -33.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260981338.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.392 kcal (2) G-P(sol) polarization free energy of solvation -26.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds