Wall clock time and date at job start Mon Mar 30 2020 20:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47415 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47290 * 300.00171 * 3 2 1 6 6 H 1.48504 * 109.47173 * 59.99809 * 3 2 1 7 7 C 1.37881 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99969 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.76970 * 59.32684 * 9 7 2 11 11 C 1.53545 * 109.73575 * 298.65467 * 9 7 2 12 12 C 1.53538 * 108.62106 * 286.85318 * 11 9 7 13 13 C 1.53900 * 108.11123 * 313.49190 * 12 11 9 14 14 C 1.54048 * 111.18750 * 71.98862 * 13 12 11 15 15 C 1.53899 * 109.73862 * 179.97438 * 9 7 2 16 16 C 1.54283 * 110.85026 * 141.26374 * 15 9 7 17 17 H 0.96995 * 120.00560 * 0.02562 * 1 2 3 18 18 H 1.00901 * 110.99591 * 300.67188 * 10 9 7 19 19 H 1.00898 * 110.99578 * 64.62869 * 10 9 7 20 20 H 1.09003 * 109.61279 * 167.11273 * 11 9 7 21 21 H 1.09002 * 109.61316 * 46.59593 * 11 9 7 22 22 H 1.08997 * 109.73838 * 193.83770 * 12 11 9 23 23 H 1.09004 * 109.77292 * 73.16640 * 12 11 9 24 24 H 1.08995 * 114.70344 * 205.34163 * 13 12 11 25 25 H 1.09004 * 113.82454 * 165.63344 * 14 13 12 26 26 H 1.08994 * 113.82613 * 34.05381 * 14 13 12 27 27 H 1.08999 * 114.69982 * 274.31023 * 15 9 7 28 28 H 1.09001 * 113.85112 * 33.62429 * 16 15 9 29 29 H 1.09003 * 113.85456 * 165.15575 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 0.3923 -2.5761 -1.1911 11 6 0.3911 -2.6025 1.2661 12 6 1.3139 -2.8690 2.4640 13 6 2.2986 -3.9844 2.0706 14 6 3.3433 -3.4739 1.0601 15 6 2.2457 -3.6736 -0.0028 16 6 1.7424 -4.8203 0.8984 17 1 -0.4851 0.8400 -0.0004 18 1 -0.2683 -1.8137 -1.2100 19 1 0.9448 -2.5969 -2.0352 20 1 -0.3184 -3.4234 1.1611 21 1 -0.1475 -1.6675 1.4201 22 1 0.7212 -3.1871 3.3217 23 1 1.8653 -1.9625 2.7136 24 1 2.6967 -4.5569 2.9082 25 1 4.1995 -4.1375 0.9388 26 1 3.6276 -2.4323 1.2091 27 1 2.5968 -3.9721 -0.9905 28 1 0.6577 -4.9278 0.9103 29 1 2.2628 -5.7651 0.7415 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260981338.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:29 Heat of formation + Delta-G solvation = 2.100574 kcal Electronic energy + Delta-G solvation = -11702.221215 eV Core-core repulsion = 9817.812005 eV Total energy + Delta-G solvation = -1884.409210 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.48123 -35.83190 -32.88337 -31.69498 -28.34050 -27.06538 -25.59938 -22.76043 -21.60803 -18.98852 -17.31160 -17.04223 -16.72581 -15.82850 -15.26426 -14.64705 -14.43963 -13.52351 -13.24126 -12.97011 -12.67808 -12.49801 -12.28198 -12.21732 -11.80851 -11.74307 -11.44045 -10.73112 -10.56981 -10.52485 -10.21740 -9.01070 -7.96535 -6.19891 1.35625 1.40747 1.48997 2.41634 3.16954 3.87885 3.99231 4.05752 4.15975 4.59360 4.68230 4.78306 4.91233 4.96465 4.98575 5.16721 5.22383 5.32625 5.47050 5.50907 5.54082 5.64471 5.76865 6.07213 6.11809 6.33795 6.81780 7.14955 7.25346 7.54859 8.93829 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.052128 B = 0.017476 C = 0.016343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.009370 B = 1601.822400 C = 1712.849248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.241 3.759 10 N -0.848 5.848 11 C -0.096 4.096 12 C -0.090 4.090 13 C -0.104 4.104 14 C -0.135 4.135 15 C -0.099 4.099 16 C -0.130 4.130 17 H 0.260 0.740 18 H 0.343 0.657 19 H 0.312 0.688 20 H 0.029 0.971 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 -5.123 2.546 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.576 4.576 8 H 0.067 0.933 9 C 0.150 3.850 10 N -0.375 5.375 11 C -0.134 4.134 12 C -0.128 4.128 13 C -0.122 4.122 14 C -0.172 4.172 15 C -0.118 4.118 16 C -0.168 4.168 17 H 0.070 0.930 18 H 0.158 0.842 19 H 0.121 0.879 20 H 0.048 0.952 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.316 -5.695 2.854 7.181 hybrid contribution 0.663 2.193 -0.422 2.330 sum 3.979 -3.502 2.432 5.832 Atomic orbital electron populations 1.69796 1.06504 1.26844 1.51914 1.25561 0.95542 1.01451 0.94978 0.85764 0.79095 0.80955 0.77261 1.19863 1.21071 1.21121 1.22155 0.93224 0.92559 1.49638 0.93326 1.18486 0.88540 0.89930 0.88082 1.59449 1.21419 1.52299 1.04378 1.21571 0.97207 0.99184 0.95482 1.21461 0.96963 0.97132 0.97239 1.22651 0.96597 0.96659 0.96307 1.23238 0.96190 1.00800 0.97013 1.22695 0.96851 0.96121 0.96109 1.23212 1.00203 0.96727 0.96613 0.92991 0.84250 0.87896 0.95221 0.92810 0.92159 0.93648 0.88922 0.89646 0.92538 0.92554 0.92624 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.59 9.63 21.45 0.21 -49.39 15 2 C 0.02 1.26 5.15 84.66 0.44 1.69 15 3 Si 0.94 42.95 29.54 68.60 2.03 44.98 15 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.29 -12.95 7.11 99.48 0.71 -12.24 15 7 C -0.54 -28.06 6.96 25.60 0.18 -27.89 15 8 H 0.05 2.59 6.25 -2.91 -0.02 2.57 15 9 C 0.24 11.59 0.64 3.27 0.00 11.59 15 10 N -0.85 -41.06 8.89 -152.59 -1.36 -42.41 15 11 C -0.10 -4.56 4.67 30.96 0.14 -4.42 15 12 C -0.09 -3.66 5.82 31.08 0.18 -3.48 15 13 C -0.10 -3.68 5.05 -9.74 -0.05 -3.73 15 14 C -0.13 -5.06 6.98 31.26 0.22 -4.84 15 15 C -0.10 -4.10 4.27 -9.75 -0.04 -4.14 15 16 C -0.13 -4.66 7.25 31.43 0.23 -4.43 15 17 H 0.26 13.71 8.31 -92.71 -0.77 12.94 15 18 H 0.34 17.94 6.90 -89.69 -0.62 17.32 15 19 H 0.31 14.46 8.99 -89.70 -0.81 13.65 15 20 H 0.03 1.38 6.69 -2.39 -0.02 1.37 15 21 H 0.05 2.90 6.01 -2.39 -0.01 2.88 15 22 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 23 H 0.04 1.99 7.98 -2.38 -0.02 1.97 15 24 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 25 H 0.09 2.70 8.14 -2.38 -0.02 2.68 15 26 H 0.06 2.39 5.91 -2.39 -0.01 2.38 15 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 28 H 0.06 2.13 6.34 -2.39 -0.02 2.11 15 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 Total: -1.00 -54.73 220.27 1.90 -52.83 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.27 Total: 33.62 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 1.30 Total: -39.64 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -1.15 Total: -91.80 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -54.73 1.90 -52.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260981338.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.931 kcal (2) G-P(sol) polarization free energy of solvation -54.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds