Wall clock time and date at job start Mon Mar 30 2020 20:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47383 * 240.00354 * 3 2 1 5 5 H 1.48504 * 109.47089 * 120.00076 * 3 2 1 6 6 H 1.48507 * 109.46772 * 0.02562 * 3 2 1 7 7 C 1.37884 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99743 * 171.72915 * 7 2 1 9 9 C 1.50690 * 120.00221 * 351.72809 * 7 2 1 10 10 C 1.53005 * 110.43476 * 301.89008 * 9 7 2 11 11 N 1.46900 * 109.46638 * 294.54676 * 10 9 7 12 12 C 1.54884 * 110.49013 * 179.34591 * 9 7 2 13 13 C 1.54893 * 102.74748 * 279.26416 * 12 9 7 14 14 C 1.54267 * 104.19419 * 322.05318 * 13 12 9 15 15 H 1.09004 * 117.40581 * 163.58766 * 14 13 12 16 16 C 1.52999 * 118.20227 * 318.22067 * 14 13 12 17 17 C 1.53873 * 106.59651 * 23.61262 * 14 13 12 18 18 H 1.09005 * 121.32571 * 138.06422 * 17 14 13 19 19 H 0.97002 * 120.00653 * 183.27186 * 1 2 3 20 20 H 1.09001 * 109.47200 * 54.54162 * 10 9 7 21 21 H 1.09002 * 109.47445 * 174.54799 * 10 9 7 22 22 H 1.00904 * 111.00386 * 61.51179 * 11 10 9 23 23 H 1.00906 * 111.00220 * 185.46566 * 11 10 9 24 24 H 1.09005 * 110.75643 * 37.57757 * 12 9 7 25 25 H 1.09003 * 110.75658 * 160.94922 * 12 9 7 26 26 H 1.08998 * 110.48313 * 80.73382 * 13 12 9 27 27 H 1.09001 * 110.48398 * 203.24650 * 13 12 9 28 28 H 1.08999 * 117.46037 * 201.21489 * 16 14 13 29 29 H 1.09004 * 117.46029 * 346.01676 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 3.1030 1.6963 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0045 -1.1941 -0.0005 8 1 3.0761 -1.1989 -0.1351 9 6 1.2628 -2.4924 0.1866 10 6 0.4990 -2.4850 1.5124 11 7 1.4543 -2.4426 2.6275 12 6 2.2437 -3.6898 0.1329 13 6 2.4451 -3.8987 -1.3886 14 6 1.0515 -3.6332 -1.9946 15 1 0.9975 -3.4517 -3.0681 16 6 -0.1720 -4.1948 -1.2676 17 6 0.2998 -2.7391 -0.9930 18 1 -0.3082 -1.8989 -1.3287 19 1 -0.4851 -0.8386 0.0479 20 1 -0.1476 -1.6085 1.5543 21 1 -0.1073 -3.3877 1.5875 22 1 2.0119 -1.6023 2.5943 23 1 0.9795 -2.5265 3.5139 24 1 3.1876 -3.4380 0.6165 25 1 1.7989 -4.5744 0.5887 26 1 3.1726 -3.1867 -1.7784 27 1 2.7645 -4.9203 -1.5945 28 1 -1.0867 -4.3210 -1.8467 29 1 0.0022 -4.9445 -0.4957 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983762.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:36 Heat of formation + Delta-G solvation = 2.423426 kcal Electronic energy + Delta-G solvation = -11552.357665 eV Core-core repulsion = 9667.962454 eV Total energy + Delta-G solvation = -1884.395211 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 181.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.69089 -36.00470 -33.85028 -31.65978 -29.14723 -26.40853 -24.43207 -23.46572 -20.41274 -20.09772 -18.65895 -16.84707 -16.15692 -15.74096 -15.62206 -14.90018 -14.25790 -14.06969 -13.49573 -13.19755 -12.73160 -12.49376 -12.15951 -11.99453 -11.94107 -11.49084 -11.14108 -11.02247 -10.68963 -10.21400 -9.94736 -9.38415 -8.32948 -6.12808 1.55287 1.60114 1.79163 2.61611 2.97880 3.30184 3.81579 4.01321 4.12857 4.27542 4.41684 4.49017 4.72134 4.81526 4.83465 4.90300 5.03640 5.14524 5.25488 5.39162 5.44338 5.48744 5.70662 5.72647 6.29221 6.40926 6.48617 6.79841 6.91194 7.61824 8.95306 Molecular weight = 181.12amu Principal moments of inertia in cm(-1) A = 0.041480 B = 0.018246 C = 0.016400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.867927 B = 1534.243965 C = 1706.903474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.021 4.021 3 Si 1.099 2.901 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.293 1.293 7 C -0.572 4.572 8 H 0.036 0.964 9 C 0.083 3.917 10 C 0.076 3.924 11 N -0.837 5.837 12 C -0.088 4.088 13 C -0.082 4.082 14 C -0.168 4.168 15 H 0.098 0.902 16 C -0.153 4.153 17 C -0.169 4.169 18 H 0.075 0.925 19 H 0.273 0.727 20 H 0.007 0.993 21 H 0.043 0.957 22 H 0.339 0.661 23 H 0.332 0.668 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -5.424 0.212 5.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.220 4.220 3 Si 0.924 3.076 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.219 1.219 7 C -0.610 4.610 8 H 0.055 0.945 9 C 0.082 3.918 10 C -0.056 4.056 11 N -0.365 5.365 12 C -0.126 4.126 13 C -0.119 4.119 14 C -0.186 4.186 15 H 0.116 0.884 16 C -0.190 4.190 17 C -0.189 4.189 18 H 0.093 0.907 19 H 0.087 0.913 20 H 0.025 0.975 21 H 0.061 0.939 22 H 0.151 0.849 23 H 0.143 0.857 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.089 -4.443 -0.156 4.912 hybrid contribution -0.562 -0.434 0.138 0.724 sum 1.527 -4.878 -0.019 5.111 Atomic orbital electron populations 1.70890 1.07700 1.31680 1.48176 1.26712 0.96578 1.05119 0.93578 0.83139 0.74216 0.72720 0.77497 1.20730 1.19692 1.21860 1.21941 0.94129 0.92378 1.52547 0.94526 1.18671 0.90801 0.93799 0.88537 1.21715 0.93566 0.97017 0.93257 1.58716 1.27113 1.46109 1.04539 1.22178 0.98838 0.96941 0.94610 1.21775 0.94409 1.00151 0.95580 1.23041 0.92775 1.06017 0.96782 0.88405 1.23282 0.97087 0.95996 1.02656 1.23834 1.02165 0.91715 1.01149 0.90705 0.91311 0.97471 0.93877 0.84870 0.85735 0.93321 0.92994 0.92789 0.90940 0.88016 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.86 12.35 21.45 0.26 -54.60 15 2 C -0.02 -1.13 5.13 84.66 0.43 -0.69 15 3 Si 1.10 49.49 29.91 68.60 2.05 51.54 15 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 6 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 7 C -0.57 -30.36 7.01 25.60 0.18 -30.18 15 8 H 0.04 1.99 7.77 -2.91 -0.02 1.97 15 9 C 0.08 3.90 0.28 -51.86 -0.01 3.89 15 10 C 0.08 3.47 5.47 86.30 0.47 3.94 15 11 N -0.84 -33.92 9.13 -186.71 -1.71 -35.63 15 12 C -0.09 -3.69 4.88 31.88 0.16 -3.54 15 13 C -0.08 -3.15 6.54 31.67 0.21 -2.94 15 14 C -0.17 -6.63 6.97 -10.07 -0.07 -6.70 15 15 H 0.10 3.66 8.14 -2.38 -0.02 3.64 15 16 C -0.15 -5.62 9.94 31.44 0.31 -5.30 15 17 C -0.17 -7.78 5.00 -9.22 -0.05 -7.82 15 18 H 0.07 3.95 6.25 -2.38 -0.01 3.94 15 19 H 0.27 15.77 3.93 -92.71 -0.36 15.40 15 20 H 0.01 0.37 5.61 -2.39 -0.01 0.36 15 21 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.34 14.63 8.29 -89.69 -0.74 13.88 15 23 H 0.33 11.46 9.08 -89.69 -0.81 10.65 15 24 H 0.05 2.11 8.03 -2.38 -0.02 2.09 15 25 H 0.05 2.05 7.33 -2.39 -0.02 2.03 15 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 28 H 0.10 3.28 8.14 -2.39 -0.02 3.26 15 29 H 0.09 3.20 7.27 -2.38 -0.02 3.18 15 Total: -1.00 -58.41 228.20 2.24 -56.17 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.00 Total: 31.87 kcal Atomic # 6 Polarization: -50.99 SS G_CDS: 1.63 Total: -49.36 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -1.44 Total: -90.22 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.54 kcal Total: -58.41 2.24 -56.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983762.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.596 kcal (2) G-P(sol) polarization free energy of solvation -58.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds