Wall clock time and date at job start Mon Mar 30 2020 20:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.78531 * 2 1 4 4 C 1.50401 * 109.69047 * 120.55988 * 2 1 3 5 5 C 1.54061 * 112.53645 * 213.97999 * 4 2 1 6 6 C 1.54069 * 112.73553 * 318.11632 * 5 4 2 7 7 C 1.50471 * 112.49297 * 318.33803 * 6 5 4 8 8 C 1.54243 * 108.51603 * 94.15432 * 7 6 5 9 9 C 1.45541 * 112.40317 * 280.00628 * 8 7 6 10 10 H 1.09000 * 108.89892 * 301.18660 * 9 8 7 11 11 C 1.50701 * 108.89342 * 182.59272 * 9 8 7 12 12 H 1.08002 * 120.00132 * 245.54386 * 11 9 8 13 13 C 1.37874 * 120.00137 * 65.55120 * 11 9 8 14 14 N 1.31523 * 119.99739 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00617 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46717 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47208 * 119.99707 * 15 13 11 18 18 H 1.48499 * 109.47484 * 240.00171 * 15 13 11 19 19 H 1.09004 * 109.46877 * 173.18020 * 1 2 3 20 20 H 1.08995 * 109.47228 * 293.18546 * 1 2 3 21 21 H 1.09002 * 109.46826 * 53.18563 * 1 2 3 22 22 H 1.09002 * 108.94443 * 93.12938 * 4 2 1 23 23 H 1.08999 * 108.77026 * 334.70778 * 4 2 1 24 24 H 1.09007 * 108.81107 * 197.31230 * 5 4 2 25 25 H 1.08995 * 108.81613 * 78.92285 * 5 4 2 26 26 H 1.08994 * 108.87392 * 79.11185 * 6 5 4 27 27 H 1.08993 * 108.87615 * 197.66169 * 6 5 4 28 28 H 1.09007 * 109.62889 * 213.85410 * 7 6 5 29 29 H 1.08997 * 109.63559 * 334.24449 * 7 6 5 30 30 H 1.08992 * 108.89731 * 40.76309 * 8 7 6 31 31 H 1.09003 * 108.89276 * 159.35699 * 8 7 6 32 32 H 0.96995 * 119.99675 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0368 -0.7200 1.2194 5 6 3.3467 -0.1157 1.7601 6 6 4.3395 0.2518 0.6407 7 6 4.4029 -0.7944 -0.4389 8 6 3.4278 -0.3954 -1.5654 9 6 2.0483 -0.7371 -1.2518 10 1 1.9805 -1.8116 -1.0820 11 6 1.1764 -0.3730 -2.4259 12 1 0.4350 0.4060 -2.3269 13 6 1.3251 -1.0347 -3.6264 14 7 2.2283 -1.9831 -3.7470 15 14 0.2440 -0.5841 -5.0815 16 1 -0.6843 0.5066 -4.6893 17 1 1.0962 -0.1268 -6.2085 18 1 -0.5388 -1.7732 -5.5037 19 1 -0.3633 -1.0204 -0.1220 20 1 -0.3633 0.4046 0.9446 21 1 -0.3633 0.6158 -0.8228 22 1 2.2090 -1.7662 0.9665 23 1 1.2764 -0.6681 1.9986 24 1 3.8189 -0.8386 2.4254 25 1 3.1105 0.7832 2.3294 26 1 4.0349 1.1992 0.1963 27 1 5.3325 0.3694 1.0747 28 1 5.4168 -0.8507 -0.8352 29 1 4.1161 -1.7624 -0.0281 30 1 3.4970 0.6802 -1.7277 31 1 3.7178 -0.9096 -2.4818 32 1 2.3332 -2.4483 -4.5916 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060247708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:38 Heat of formation + Delta-G solvation = -32.269696 kcal Electronic energy + Delta-G solvation = -11767.783304 eV Core-core repulsion = 9919.998119 eV Total energy + Delta-G solvation = -1847.785185 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.26448 -33.39652 -32.38752 -30.56131 -26.70597 -25.52700 -22.52787 -21.97932 -19.17089 -18.20186 -16.30126 -14.86349 -14.25674 -13.78455 -13.41671 -13.23169 -12.30648 -12.14962 -11.75146 -11.58004 -11.04441 -10.91557 -10.87917 -10.58614 -10.33701 -10.09069 -9.75681 -9.50997 -9.41425 -9.28706 -8.71768 -8.44415 -8.15548 -5.90141 -3.94588 3.33335 3.41607 3.45073 4.50434 5.37263 5.46718 5.54027 5.57658 6.00515 6.05318 6.14552 6.34393 6.35559 6.41130 6.51739 6.64451 6.68648 6.77890 6.86657 6.97076 7.02974 7.14375 7.25485 7.31459 7.44793 7.79569 7.87485 8.16474 8.32542 8.60720 9.12129 9.69456 11.16293 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.053095 B = 0.014221 C = 0.012082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.234448 B = 1968.481230 C = 2316.886105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 H 0.051 0.949 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.113 4.113 7 C -0.121 4.121 8 C -0.100 4.100 9 C 0.050 3.950 10 H 0.026 0.974 11 C -0.507 4.507 12 H 0.060 0.940 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.885 3.115 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.286 1.286 19 H 0.048 0.952 20 H 0.022 0.978 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 2.749 6.934 7.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 H 0.069 0.931 4 C -0.149 4.149 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.138 4.138 9 C 0.032 3.968 10 H 0.044 0.956 11 C -0.545 4.545 12 H 0.078 0.922 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.713 3.287 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.212 1.212 19 H 0.067 0.933 20 H 0.041 0.959 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.405 2.624 6.803 7.426 hybrid contribution -0.518 0.156 -0.885 1.037 sum 0.886 2.780 5.918 6.599 Atomic orbital electron populations 1.21765 0.96433 1.01450 0.98704 1.20897 0.94732 0.98833 0.95738 0.93061 1.21456 0.95311 1.00400 0.97706 1.21864 0.96128 0.99468 0.97352 1.21337 0.97183 1.00007 0.96490 1.21426 0.99154 0.98246 0.97001 1.20534 0.96058 0.99063 0.98153 1.17673 0.92462 0.95617 0.91045 0.95552 1.21499 1.18348 1.19052 0.95643 0.92203 1.24989 0.95495 0.95263 0.98614 1.69913 1.34018 1.24160 1.25274 0.86651 0.80688 0.78235 0.83106 1.19890 1.21249 1.21237 0.93294 0.95851 0.92285 0.92492 0.93861 0.93487 0.93446 0.92413 0.94080 0.94019 0.92705 0.95115 0.89821 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.19 37.16 0.30 -2.23 16 2 C -0.08 -1.74 2.15 -91.27 -0.20 -1.94 16 3 H 0.05 1.07 6.98 -51.93 -0.36 0.71 16 4 C -0.11 -2.03 4.88 -27.47 -0.13 -2.17 16 5 C -0.11 -1.80 5.86 -25.62 -0.15 -1.95 16 6 C -0.11 -1.94 5.31 -27.44 -0.15 -2.09 16 7 C -0.12 -2.39 5.60 -27.34 -0.15 -2.54 16 8 C -0.10 -2.38 4.39 -29.60 -0.13 -2.51 16 9 C 0.05 1.24 1.33 -94.64 -0.13 1.12 16 10 H 0.03 0.73 7.45 -51.93 -0.39 0.34 16 11 C -0.51 -13.78 7.57 -34.44 -0.26 -14.04 16 12 H 0.06 1.61 5.75 -52.49 -0.30 1.31 16 13 C 0.06 1.57 5.28 -17.82 -0.09 1.48 16 14 N -0.89 -25.85 11.60 55.43 0.64 -25.21 16 15 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 20 H 0.02 0.40 7.94 -51.93 -0.41 -0.02 16 21 H 0.06 1.23 6.18 -51.93 -0.32 0.91 16 22 H 0.06 1.10 6.62 -51.93 -0.34 0.76 16 23 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.03 6.63 -51.93 -0.34 0.69 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.05 1.11 6.99 -51.93 -0.36 0.74 16 30 H 0.03 0.72 7.47 -51.93 -0.39 0.33 16 31 H 0.08 2.25 6.15 -51.93 -0.32 1.93 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 237.75 15.07 3.58 3.58 Total: -1.00 -27.69 237.75 -7.06 -34.75 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.18 Total: -2.74 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -1.09 Total: -26.87 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.64 Total: -25.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.69 -7.06 -34.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060247708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.481 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds