Wall clock time and date at job start Mon Mar 30 2020 20:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.78531 * 2 1 4 4 C 1.50401 * 109.69047 * 120.55988 * 2 1 3 5 5 C 1.54061 * 112.53645 * 213.97999 * 4 2 1 6 6 C 1.54069 * 112.73553 * 318.11632 * 5 4 2 7 7 C 1.50471 * 112.49297 * 318.33803 * 6 5 4 8 8 C 1.54243 * 108.51603 * 94.15432 * 7 6 5 9 9 C 1.45541 * 112.40317 * 280.00628 * 8 7 6 10 10 H 1.09000 * 108.89892 * 301.18660 * 9 8 7 11 11 C 1.50701 * 108.89342 * 182.59272 * 9 8 7 12 12 H 1.08002 * 120.00132 * 245.54386 * 11 9 8 13 13 C 1.37874 * 120.00137 * 65.55120 * 11 9 8 14 14 N 1.31523 * 119.99739 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00617 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46717 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47208 * 119.99707 * 15 13 11 18 18 H 1.48499 * 109.47484 * 240.00171 * 15 13 11 19 19 H 1.09004 * 109.46877 * 173.18020 * 1 2 3 20 20 H 1.08995 * 109.47228 * 293.18546 * 1 2 3 21 21 H 1.09002 * 109.46826 * 53.18563 * 1 2 3 22 22 H 1.09002 * 108.94443 * 93.12938 * 4 2 1 23 23 H 1.08999 * 108.77026 * 334.70778 * 4 2 1 24 24 H 1.09007 * 108.81107 * 197.31230 * 5 4 2 25 25 H 1.08995 * 108.81613 * 78.92285 * 5 4 2 26 26 H 1.08994 * 108.87392 * 79.11185 * 6 5 4 27 27 H 1.08993 * 108.87615 * 197.66169 * 6 5 4 28 28 H 1.09007 * 109.62889 * 213.85410 * 7 6 5 29 29 H 1.08997 * 109.63559 * 334.24449 * 7 6 5 30 30 H 1.08992 * 108.89731 * 40.76309 * 8 7 6 31 31 H 1.09003 * 108.89276 * 159.35699 * 8 7 6 32 32 H 0.96995 * 119.99675 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0368 -0.7200 1.2194 5 6 3.3467 -0.1157 1.7601 6 6 4.3395 0.2518 0.6407 7 6 4.4029 -0.7944 -0.4389 8 6 3.4278 -0.3954 -1.5654 9 6 2.0483 -0.7371 -1.2518 10 1 1.9805 -1.8116 -1.0820 11 6 1.1764 -0.3730 -2.4259 12 1 0.4350 0.4060 -2.3269 13 6 1.3251 -1.0347 -3.6264 14 7 2.2283 -1.9831 -3.7470 15 14 0.2440 -0.5841 -5.0815 16 1 -0.6843 0.5066 -4.6893 17 1 1.0962 -0.1268 -6.2085 18 1 -0.5388 -1.7732 -5.5037 19 1 -0.3633 -1.0204 -0.1220 20 1 -0.3633 0.4046 0.9446 21 1 -0.3633 0.6158 -0.8228 22 1 2.2090 -1.7662 0.9665 23 1 1.2764 -0.6681 1.9986 24 1 3.8189 -0.8386 2.4254 25 1 3.1105 0.7832 2.3294 26 1 4.0349 1.1992 0.1963 27 1 5.3325 0.3694 1.0747 28 1 5.4168 -0.8507 -0.8352 29 1 4.1161 -1.7624 -0.0281 30 1 3.4970 0.6802 -1.7277 31 1 3.7178 -0.9096 -2.4818 32 1 2.3332 -2.4483 -4.5916 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060247708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:38 Heat of formation + Delta-G solvation = -46.745406 kcal Electronic energy + Delta-G solvation = -11768.411018 eV Core-core repulsion = 9919.998119 eV Total energy + Delta-G solvation = -1848.412899 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.94286 -35.23369 -34.07182 -32.39564 -28.35022 -27.41217 -24.29966 -23.58317 -20.97445 -19.73394 -18.38144 -16.75171 -15.89573 -15.28609 -15.15199 -14.94386 -14.15937 -13.82520 -13.35677 -13.25219 -12.85209 -12.77212 -12.55960 -12.26246 -12.13017 -11.85541 -11.33900 -11.23636 -11.03073 -10.90990 -10.60562 -10.39524 -10.21499 -8.03022 -6.14176 1.38730 1.41081 1.51550 2.45786 3.24948 3.97643 4.12059 4.21192 4.49827 4.50277 4.57954 4.78622 4.81300 4.90991 5.04032 5.05178 5.13630 5.21734 5.29807 5.39907 5.45918 5.56726 5.57827 5.67560 5.76480 5.78166 5.85720 6.15239 6.36260 6.53544 7.03000 7.53096 9.02229 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.053095 B = 0.014221 C = 0.012082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.234448 B = 1968.481230 C = 2316.886105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 H 0.054 0.946 4 C -0.110 4.110 5 C -0.108 4.108 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.095 4.095 9 C 0.051 3.949 10 H -0.012 1.012 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.004 3.996 14 N -0.924 5.924 15 Si 0.946 3.054 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.284 1.284 19 H 0.034 0.966 20 H 0.057 0.943 21 H 0.043 0.957 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 3.856 8.390 9.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.147 4.147 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.150 4.150 8 C -0.133 4.133 9 C 0.033 3.967 10 H 0.006 0.994 11 C -0.558 4.558 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.565 5.565 15 Si 0.772 3.228 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.211 1.211 19 H 0.053 0.947 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.295 3.741 8.268 9.167 hybrid contribution -0.490 -0.203 -1.346 1.447 sum 0.804 3.538 6.922 7.815 Atomic orbital electron populations 1.21716 0.95833 1.00484 0.99987 1.20815 0.95301 0.98609 0.95033 0.92751 1.21396 0.97328 0.98981 0.97026 1.21857 0.94598 1.00880 0.97170 1.21294 0.99286 0.98298 0.95956 1.21318 0.98296 0.98853 0.96566 1.20389 0.96706 0.98063 0.98184 1.17646 0.92926 0.93740 0.92404 0.99366 1.21907 1.18506 1.18732 0.96680 0.92171 1.25746 0.96802 0.95402 1.01318 1.70060 1.35479 1.25215 1.25762 0.85689 0.79110 0.78074 0.79910 1.18985 1.21027 1.21053 0.94728 0.92387 0.93748 0.94418 0.91637 0.91572 0.91178 0.93105 0.91205 0.93062 0.93476 0.95583 0.93740 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 8.19 71.98 0.59 -4.18 16 2 C -0.08 -3.22 2.15 -11.21 -0.02 -3.24 16 3 H 0.05 2.18 6.98 -2.39 -0.02 2.16 16 4 C -0.11 -3.77 4.88 30.11 0.15 -3.63 16 5 C -0.11 -3.10 5.86 31.31 0.18 -2.92 16 6 C -0.11 -3.51 5.31 30.14 0.16 -3.35 16 7 C -0.11 -4.38 5.60 30.20 0.17 -4.21 16 8 C -0.10 -4.62 4.39 28.74 0.13 -4.49 16 9 C 0.05 2.58 1.33 -13.40 -0.02 2.56 16 10 H -0.01 -0.68 7.45 -2.39 -0.02 -0.70 16 11 C -0.52 -28.75 7.57 25.60 0.19 -28.56 16 12 H 0.06 3.25 5.75 -2.91 -0.02 3.24 16 13 C 0.00 0.25 5.28 84.65 0.45 0.69 16 14 N -0.92 -55.15 11.60 21.45 0.25 -54.90 16 15 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 20 H 0.06 1.83 7.94 -2.39 -0.02 1.81 16 21 H 0.04 1.81 6.18 -2.39 -0.01 1.80 16 22 H 0.04 1.43 6.62 -2.39 -0.02 1.41 16 23 H 0.06 1.96 7.57 -2.39 -0.02 1.94 16 24 H 0.07 1.68 8.14 -2.38 -0.02 1.67 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.68 6.63 -2.39 -0.02 1.67 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.05 1.89 6.99 -2.39 -0.02 1.87 16 30 H 0.03 1.24 7.47 -2.39 -0.02 1.22 16 31 H 0.04 2.48 6.15 -2.39 -0.01 2.47 16 32 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -60.14 237.75 5.32 -54.82 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.07 Total: 4.66 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 1.97 Total: -51.32 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.25 Total: -54.90 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -60.14 5.32 -54.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060247708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.075 kcal (2) G-P(sol) polarization free energy of solvation -60.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds