Wall clock time and date at job start Mon Mar 30 2020 20:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.08995 * 108.85251 * 298.56075 * 9 7 2 11 11 C 1.50472 * 108.87789 * 57.02766 * 9 7 2 12 12 C 1.54241 * 108.52326 * 214.92291 * 11 9 7 13 13 C 1.45540 * 112.40650 * 280.01574 * 12 11 9 14 14 C 1.54242 * 112.40712 * 61.93512 * 13 12 11 15 15 C 1.50472 * 108.51810 * 280.01000 * 14 13 12 16 16 C 1.54070 * 108.87196 * 180.02562 * 9 7 2 17 17 H 1.09001 * 108.81565 * 76.64449 * 16 9 7 18 18 N 1.46900 * 108.81560 * 318.25246 * 16 9 7 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.62838 * 334.63220 * 11 9 7 21 21 H 1.09001 * 109.63152 * 95.21482 * 11 9 7 22 22 H 1.08999 * 108.89731 * 159.25939 * 12 11 9 23 23 H 1.09003 * 108.89137 * 40.76902 * 12 11 9 24 24 H 1.08996 * 108.89549 * 301.18423 * 13 12 11 25 25 H 1.08993 * 108.89645 * 182.69071 * 13 12 11 26 26 H 1.08997 * 109.63093 * 160.29918 * 14 13 12 27 27 H 1.09000 * 109.78840 * 39.81553 * 14 13 12 28 28 H 1.08996 * 108.87716 * 333.37722 * 15 14 13 29 29 H 1.09006 * 108.79779 * 214.87349 * 15 14 13 30 30 H 1.00902 * 111.00209 * 180.02562 * 18 16 9 31 31 H 1.00904 * 111.00050 * 303.96137 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6482 -2.5578 0.9056 11 6 0.3361 -2.5330 -1.1946 12 6 -0.9544 -3.2812 -0.8021 13 6 -0.7881 -4.7268 -0.8310 14 6 0.2749 -5.2165 0.1736 15 6 1.6369 -5.0004 -0.4284 16 6 2.2643 -3.6597 -0.0005 17 1 2.6751 -3.7678 1.0033 18 7 3.3574 -3.3343 -0.9264 19 1 -0.4849 0.8400 0.0004 20 1 0.0913 -1.5149 -1.4974 21 1 0.8261 -3.0547 -2.0167 22 1 -1.7483 -3.0033 -1.4953 23 1 -1.2452 -2.9793 0.2041 24 1 -0.4898 -5.0278 -1.8352 25 1 -1.7422 -5.1967 -0.5924 26 1 0.1275 -6.2776 0.3745 27 1 0.1917 -4.6530 1.1029 28 1 1.5492 -5.0184 -1.5147 29 1 2.2926 -5.8126 -0.1144 30 1 4.0420 -4.0751 -0.9523 31 1 3.0024 -3.1378 -1.8503 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257986708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:06 Heat of formation + Delta-G solvation = -18.710876 kcal Electronic energy + Delta-G solvation = -11938.472804 eV Core-core repulsion = 10025.849663 eV Total energy + Delta-G solvation = -1912.623141 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.31280 -33.65961 -32.91434 -30.32813 -28.33454 -25.28646 -22.85375 -22.36011 -19.66358 -17.93367 -16.17916 -15.53160 -14.40627 -14.15473 -13.87055 -13.55971 -12.39945 -12.26603 -12.12330 -11.64812 -11.40503 -10.93661 -10.82231 -10.50368 -10.27256 -9.94182 -9.90121 -9.52812 -9.28997 -8.92032 -8.50353 -8.07450 -7.55322 -5.78646 -3.80670 3.40996 3.49098 3.55817 4.60898 5.30936 5.43582 5.51276 5.55214 5.72148 6.01210 6.14516 6.16694 6.38493 6.40302 6.50251 6.57961 6.84547 6.89456 6.91361 7.01898 7.08864 7.40318 7.70649 7.83677 8.11976 8.20608 8.34826 8.40767 8.76187 9.30340 9.81865 11.26469 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.050944 B = 0.015143 C = 0.012497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.492467 B = 1848.617262 C = 2239.975094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.048 3.952 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.484 4.484 8 H 0.073 0.927 9 C 0.052 3.948 10 H 0.024 0.976 11 C -0.094 4.094 12 C -0.115 4.115 13 C -0.107 4.107 14 C -0.110 4.110 15 C -0.148 4.148 16 C 0.100 3.900 17 H 0.056 0.944 18 N -0.825 5.825 19 H 0.254 0.746 20 H 0.093 0.907 21 H 0.017 0.983 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.312 0.688 31 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -7.908 -1.779 8.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.151 4.151 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.523 4.523 8 H 0.091 0.909 9 C 0.033 3.967 10 H 0.042 0.958 11 C -0.132 4.132 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.148 4.148 15 C -0.187 4.187 16 C -0.011 4.011 17 H 0.074 0.926 18 N -0.352 5.352 19 H 0.063 0.937 20 H 0.111 0.889 21 H 0.036 0.964 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.485 -7.140 -1.290 7.272 hybrid contribution 0.018 0.011 -0.544 0.545 sum 0.502 -7.129 -1.835 7.379 Atomic orbital electron populations 1.69981 1.05708 1.25640 1.52480 1.25010 0.94784 0.98882 0.96420 0.86611 0.80366 0.84353 0.77061 1.19855 1.21575 1.21618 1.21496 0.94119 0.89582 1.47126 0.90932 1.18570 0.91788 0.91534 0.94809 0.95794 1.21340 0.93258 1.00882 0.97679 1.20425 0.99610 0.93745 1.01436 1.20491 0.97603 0.98015 0.98328 1.21218 0.94978 0.99043 0.99598 1.22279 0.96789 0.99394 1.00274 1.22062 0.91887 0.92361 0.94827 0.92552 1.58956 1.16211 1.46129 1.13881 0.93656 0.88914 0.96420 0.94567 0.92387 0.93551 0.94050 0.93595 0.91365 0.93000 0.94234 0.87769 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.35 55.43 0.63 -25.13 16 2 C 0.05 1.33 5.02 -17.82 -0.09 1.24 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.48 -13.29 8.00 -34.44 -0.28 -13.56 16 8 H 0.07 2.04 6.94 -52.49 -0.36 1.68 16 9 C 0.05 1.25 1.48 -92.47 -0.14 1.12 16 10 H 0.02 0.65 6.63 -51.93 -0.34 0.30 16 11 C -0.09 -2.18 4.61 -27.34 -0.13 -2.31 16 12 C -0.11 -2.37 5.26 -29.60 -0.16 -2.52 16 13 C -0.11 -1.85 5.26 -29.60 -0.16 -2.01 16 14 C -0.11 -1.86 5.60 -27.34 -0.15 -2.02 16 15 C -0.15 -2.54 4.84 -27.43 -0.13 -2.67 16 16 C 0.10 2.05 2.93 -66.59 -0.20 1.85 16 17 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 18 N -0.83 -15.96 7.69 -3.71 -0.03 -15.99 16 19 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 20 H 0.09 2.50 5.63 -51.93 -0.29 2.21 16 21 H 0.02 0.38 6.28 -51.93 -0.33 0.05 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.30 7.47 -51.93 -0.39 0.91 16 24 H 0.05 0.77 7.47 -51.93 -0.39 0.39 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.25 6.99 -51.93 -0.36 0.89 16 28 H 0.05 0.89 6.62 -51.93 -0.34 0.54 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.31 5.08 8.99 -39.29 -0.35 4.72 16 31 H 0.34 6.48 8.20 -39.29 -0.32 6.16 16 LS Contribution 233.13 15.07 3.51 3.51 Total: -1.00 -28.10 233.13 -7.06 -35.16 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.73 Total: 6.38 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -1.42 Total: -20.88 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.60 Total: -41.12 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.10 -7.06 -35.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257986708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.452 kcal (2) G-P(sol) polarization free energy of solvation -28.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds