Wall clock time and date at job start Mon Mar 30 2020 20:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48501 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00448 * 3 2 1 6 6 H 1.48500 * 109.46969 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.08995 * 108.85251 * 298.56075 * 9 7 2 11 11 C 1.50472 * 108.87789 * 57.02766 * 9 7 2 12 12 C 1.54241 * 108.52326 * 214.92291 * 11 9 7 13 13 C 1.45540 * 112.40650 * 280.01574 * 12 11 9 14 14 C 1.54242 * 112.40712 * 61.93512 * 13 12 11 15 15 C 1.50472 * 108.51810 * 280.01000 * 14 13 12 16 16 C 1.54070 * 108.87196 * 180.02562 * 9 7 2 17 17 H 1.09001 * 108.81565 * 76.64449 * 16 9 7 18 18 N 1.46900 * 108.81560 * 318.25246 * 16 9 7 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.62838 * 334.63220 * 11 9 7 21 21 H 1.09001 * 109.63152 * 95.21482 * 11 9 7 22 22 H 1.08999 * 108.89731 * 159.25939 * 12 11 9 23 23 H 1.09003 * 108.89137 * 40.76902 * 12 11 9 24 24 H 1.08996 * 108.89549 * 301.18423 * 13 12 11 25 25 H 1.08993 * 108.89645 * 182.69071 * 13 12 11 26 26 H 1.08997 * 109.63093 * 160.29918 * 14 13 12 27 27 H 1.09000 * 109.78840 * 39.81553 * 14 13 12 28 28 H 1.08996 * 108.87716 * 333.37722 * 15 14 13 29 29 H 1.09006 * 108.79779 * 214.87349 * 15 14 13 30 30 H 1.00902 * 111.00209 * 180.02562 * 18 16 9 31 31 H 1.00904 * 111.00050 * 303.96137 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6482 -2.5578 0.9056 11 6 0.3361 -2.5330 -1.1946 12 6 -0.9544 -3.2812 -0.8021 13 6 -0.7881 -4.7268 -0.8310 14 6 0.2749 -5.2165 0.1736 15 6 1.6369 -5.0004 -0.4284 16 6 2.2643 -3.6597 -0.0005 17 1 2.6751 -3.7678 1.0033 18 7 3.3574 -3.3343 -0.9264 19 1 -0.4849 0.8400 0.0004 20 1 0.0913 -1.5149 -1.4974 21 1 0.8261 -3.0547 -2.0167 22 1 -1.7483 -3.0033 -1.4953 23 1 -1.2452 -2.9793 0.2041 24 1 -0.4898 -5.0278 -1.8352 25 1 -1.7422 -5.1967 -0.5924 26 1 0.1275 -6.2776 0.3745 27 1 0.1917 -4.6530 1.1029 28 1 1.5492 -5.0184 -1.5147 29 1 2.2926 -5.8126 -0.1144 30 1 4.0420 -4.0751 -0.9523 31 1 3.0024 -3.1378 -1.8503 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257986708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:06 Heat of formation + Delta-G solvation = -36.764436 kcal Electronic energy + Delta-G solvation = -11939.255665 eV Core-core repulsion = 10025.849663 eV Total energy + Delta-G solvation = -1913.406002 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.94304 -35.32622 -34.78263 -32.09589 -30.02118 -27.18522 -24.52771 -24.09536 -21.17791 -19.70780 -18.20365 -17.23110 -16.26266 -15.84672 -15.46269 -15.06649 -14.22275 -13.99298 -13.67678 -13.31720 -13.11368 -12.69284 -12.64423 -12.35866 -12.19346 -11.68277 -11.42591 -11.21575 -11.03279 -10.75034 -10.44104 -10.16549 -9.08973 -7.92826 -6.00743 1.42182 1.45265 1.57025 2.53491 3.32987 3.89794 4.01787 4.14449 4.25244 4.48260 4.63976 4.67004 4.77059 4.86333 5.01609 5.06973 5.30749 5.37518 5.39058 5.42365 5.51604 5.63268 5.83250 5.91473 6.05289 6.32251 6.56572 6.76491 6.98587 7.15669 7.65031 9.10471 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.050944 B = 0.015143 C = 0.012497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.492467 B = 1848.617262 C = 2239.975094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.000 4.000 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.496 4.496 8 H 0.063 0.937 9 C 0.054 3.946 10 H -0.012 1.012 11 C -0.086 4.086 12 C -0.105 4.105 13 C -0.106 4.106 14 C -0.110 4.110 15 C -0.138 4.138 16 C 0.104 3.896 17 H 0.044 0.956 18 N -0.836 5.836 19 H 0.252 0.748 20 H 0.053 0.947 21 H 0.032 0.968 22 H 0.038 0.962 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.333 0.667 31 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -9.378 -2.399 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.196 4.196 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.035 3.965 10 H 0.006 0.994 11 C -0.124 4.124 12 C -0.142 4.142 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.178 4.178 16 C -0.007 4.007 17 H 0.062 0.938 18 N -0.364 5.364 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.146 0.854 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.038 -8.624 -1.910 8.894 hybrid contribution -0.135 0.484 -0.328 0.600 sum 0.903 -8.140 -2.238 8.490 Atomic orbital electron populations 1.70115 1.06786 1.26041 1.53244 1.25678 0.95547 1.01837 0.96541 0.85703 0.79216 0.80894 0.76912 1.19607 1.21253 1.21567 1.21781 0.93857 0.91238 1.46596 0.91870 1.18476 0.92223 0.92201 0.93569 0.99361 1.21129 0.94505 0.99230 0.97575 1.20313 0.98148 0.96106 0.99664 1.20446 0.99171 0.95281 0.99419 1.21235 0.94578 1.00695 0.98327 1.22148 0.97256 0.97773 1.00608 1.21832 0.91326 0.92743 0.94818 0.93774 1.58798 1.16431 1.47583 1.13628 0.93906 0.92874 0.94905 0.94289 0.95173 0.92043 0.91826 0.90303 0.93592 0.92311 0.91621 0.85439 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 11.35 21.45 0.24 -53.90 16 2 C 0.00 0.01 5.02 84.66 0.43 0.43 16 3 Si 0.94 45.67 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.50 -27.59 8.00 25.60 0.20 -27.38 16 8 H 0.06 3.58 6.94 -2.91 -0.02 3.56 16 9 C 0.05 2.66 1.48 -11.99 -0.02 2.64 16 10 H -0.01 -0.65 6.63 -2.39 -0.02 -0.67 16 11 C -0.09 -4.04 4.61 30.20 0.14 -3.90 16 12 C -0.10 -4.29 5.26 28.74 0.15 -4.14 16 13 C -0.11 -3.39 5.26 28.74 0.15 -3.24 16 14 C -0.11 -3.42 5.60 30.20 0.17 -3.25 16 15 C -0.14 -4.34 4.84 30.14 0.15 -4.19 16 16 C 0.10 4.16 2.93 45.65 0.13 4.30 16 17 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 18 N -0.84 -31.01 7.69 -165.65 -1.27 -32.28 16 19 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 20 H 0.05 2.92 5.63 -2.39 -0.01 2.91 16 21 H 0.03 1.39 6.28 -2.39 -0.01 1.38 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.03 1.37 7.47 -2.39 -0.02 1.35 16 24 H 0.06 1.82 7.47 -2.39 -0.02 1.80 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.64 6.99 -2.39 -0.02 1.62 16 28 H 0.06 1.79 6.62 -2.39 -0.02 1.77 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.33 10.00 8.99 -89.69 -0.81 9.20 16 31 H 0.34 12.44 8.20 -89.69 -0.74 11.70 16 Total: -1.00 -60.62 233.13 2.08 -58.54 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.42 Total: 18.68 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 1.50 Total: -38.74 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -1.03 Total: -86.18 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -60.62 2.08 -58.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257986708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.778 kcal (2) G-P(sol) polarization free energy of solvation -60.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds