Wall clock time and date at job start Mon Mar 30 2020 20:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47162 * 2 1 4 4 C 1.50702 * 109.47277 * 239.99492 * 2 1 3 5 5 H 1.07999 * 120.00480 * 239.99783 * 4 2 1 6 6 C 1.37879 * 119.99739 * 60.00233 * 4 2 1 7 7 N 1.31516 * 120.00061 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99942 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47672 * 59.99863 * 8 6 4 10 10 H 1.48503 * 109.47277 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47194 * 299.99487 * 8 6 4 12 12 C 1.53007 * 109.47007 * 119.99894 * 2 1 3 13 13 H 1.08998 * 110.88796 * 56.19012 * 12 2 1 14 14 C 1.54487 * 110.96758 * 179.97438 * 12 2 1 15 15 N 1.46768 * 105.46844 * 143.53175 * 14 12 2 16 16 C 1.34409 * 111.30395 * 342.98599 * 15 14 12 17 17 O 1.21280 * 124.94201 * 180.37044 * 16 15 14 18 18 C 1.51281 * 110.11955 * 0.40487 * 16 15 14 19 19 H 1.09002 * 109.46836 * 60.00349 * 1 2 3 20 20 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47246 * 299.99849 * 1 2 3 22 22 H 0.96997 * 120.00016 * 179.97438 * 7 6 4 23 23 H 1.09000 * 110.24626 * 262.53427 * 14 12 2 24 24 H 1.09004 * 110.24609 * 24.53551 * 14 12 2 25 25 H 0.97001 * 124.34564 * 162.97972 * 15 14 12 26 26 H 1.09003 * 110.48729 * 257.57876 * 18 16 15 27 27 H 1.08997 * 110.60232 * 134.98233 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3213 -1.1206 -4.0078 9 1 1.8259 -2.5204 -4.0077 10 1 1.8260 -0.4209 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0399 -0.7213 1.2493 13 1 1.6352 -1.7317 1.3071 14 6 3.5843 -0.7420 1.2840 15 7 3.9462 -0.5875 2.6979 16 6 2.9122 -0.1204 3.4184 17 8 2.9411 0.1046 4.6098 18 6 1.7067 0.0829 2.5273 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.7088 1.1611 -3.4844 23 1 3.9575 -1.6917 0.9006 24 1 3.9859 0.0856 0.6992 25 1 4.8195 -0.7957 3.0652 26 1 1.5807 1.1396 2.2912 27 1 0.8080 -0.3108 3.0021 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260706607.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:27 Heat of formation + Delta-G solvation = -73.938276 kcal Electronic energy + Delta-G solvation = -11191.830806 eV Core-core repulsion = 9140.979730 eV Total energy + Delta-G solvation = -2050.851075 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.19726 -37.97298 -35.74708 -33.34469 -30.27209 -28.45947 -26.79630 -23.54985 -21.43582 -20.90591 -18.55293 -18.02994 -16.99962 -16.31722 -15.87575 -14.93386 -14.72818 -14.34856 -14.15243 -13.68779 -13.23084 -12.81557 -12.72564 -12.33238 -12.20232 -12.05169 -11.56165 -11.33273 -10.80765 -10.59313 -10.35162 -10.01403 -8.00694 -6.13279 1.49338 1.50703 1.56561 1.58764 2.50108 2.53293 3.28873 3.59601 3.85566 4.09897 4.36003 4.77404 4.81203 4.95884 5.02086 5.09038 5.22973 5.42611 5.45749 5.71090 5.89082 6.02748 6.07542 6.20635 6.44566 6.98724 7.30720 7.55552 9.03770 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.068802 B = 0.011160 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.865815 B = 2508.284255 C = 2794.611889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 H 0.005 0.995 4 C -0.522 4.522 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.294 1.294 11 H -0.270 1.270 12 C -0.080 4.080 13 H 0.083 0.917 14 C 0.117 3.883 15 N -0.718 5.718 16 C 0.517 3.483 17 O -0.591 6.591 18 C -0.148 4.148 19 H 0.051 0.949 20 H 0.029 0.971 21 H 0.031 0.969 22 H 0.258 0.742 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.415 0.585 26 H 0.100 0.900 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -3.630 4.043 6.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.035 3.965 3 H 0.023 0.977 4 C -0.561 4.561 5 H 0.083 0.917 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.220 1.220 11 H -0.195 1.195 12 C -0.099 4.099 13 H 0.101 0.899 14 C -0.007 4.007 15 N -0.372 5.372 16 C 0.305 3.695 17 O -0.473 6.473 18 C -0.188 4.188 19 H 0.070 0.930 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.067 0.933 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.254 0.746 26 H 0.118 0.882 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.426 -3.389 4.442 6.554 hybrid contribution 0.495 -0.249 -0.955 1.104 sum 3.921 -3.638 3.487 6.386 Atomic orbital electron populations 1.21692 0.98468 0.99071 0.99815 1.18618 0.92803 0.94264 0.90802 0.97736 1.21535 1.30783 1.12450 0.91286 0.91685 1.25682 0.95469 0.95640 1.01829 1.70017 1.37941 1.24343 1.23705 0.85776 0.78905 0.78734 0.79184 1.19821 1.22012 1.19478 1.22153 0.94162 0.99685 0.93939 0.89864 1.22137 0.95914 1.03016 0.79633 1.46290 1.14622 1.65679 1.10596 1.21251 0.86981 0.74652 0.86607 1.90664 1.85225 1.55196 1.16241 1.22438 0.96994 1.03403 0.95966 0.92989 0.95213 0.94973 0.93334 0.88986 0.91220 0.74567 0.88190 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.83 71.98 0.64 -5.22 15 2 C 0.05 2.37 1.67 -11.54 -0.02 2.35 15 3 H 0.00 0.22 8.06 -2.39 -0.02 0.20 15 4 C -0.52 -25.40 8.03 25.60 0.21 -25.19 15 5 H 0.06 2.98 7.47 -2.91 -0.02 2.96 15 6 C 0.01 0.62 5.30 84.65 0.45 1.07 15 7 N -0.92 -50.53 11.32 21.45 0.24 -50.29 15 8 Si 0.95 40.77 29.54 68.60 2.03 42.80 15 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 10 H -0.29 -12.85 7.11 99.48 0.71 -12.14 15 11 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 12 C -0.08 -2.80 2.64 -9.73 -0.03 -2.82 15 13 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 14 C 0.12 3.56 6.51 86.83 0.57 4.13 15 15 N -0.72 -20.56 6.24 -459.79 -2.87 -23.42 15 16 C 0.52 17.68 8.43 87.90 0.74 18.42 15 17 O -0.59 -24.05 18.03 -3.03 -0.05 -24.11 15 18 C -0.15 -4.82 5.64 30.59 0.17 -4.64 15 19 H 0.05 2.63 6.07 -2.39 -0.01 2.61 15 20 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.03 1.23 7.55 -2.39 -0.02 1.21 15 22 H 0.26 13.70 8.31 -92.71 -0.77 12.93 15 23 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.07 2.30 7.89 -2.38 -0.02 2.28 15 25 H 0.41 9.76 8.96 -92.71 -0.83 8.93 15 26 H 0.10 3.32 7.84 -2.39 -0.02 3.30 15 27 H 0.10 3.15 8.14 -2.39 -0.02 3.13 15 Total: -1.00 -58.60 228.22 2.40 -56.20 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.33 Total: 10.72 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 2.72 Total: -11.90 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -2.63 Total: -73.71 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -58.60 2.40 -56.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260706607.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.742 kcal (2) G-P(sol) polarization free energy of solvation -58.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds