Wall clock time and date at job start Mon Mar 30 2020 20:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47131 * 300.00310 * 3 2 1 6 6 H 1.48504 * 109.46920 * 59.99992 * 3 2 1 7 7 C 1.38810 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99724 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99797 * 179.97438 * 9 7 2 11 11 H 1.08996 * 115.58107 * 9.22854 * 10 9 7 12 12 C 1.53125 * 117.51248 * 223.45824 * 10 9 7 13 13 C 1.52460 * 117.51374 * 154.99665 * 10 9 7 14 14 C 1.53255 * 128.58417 * 349.84575 * 13 10 9 15 15 C 1.53886 * 86.88455 * 194.88651 * 14 13 10 16 16 O 1.42894 * 113.59150 * 270.31574 * 15 14 13 17 17 C 1.53419 * 128.60798 * 224.96037 * 13 10 9 18 18 H 0.97008 * 119.99555 * 359.97438 * 1 2 3 19 19 H 0.96994 * 120.00377 * 359.97438 * 9 7 2 20 20 H 1.09000 * 117.51199 * 145.10051 * 12 10 9 21 21 H 1.09001 * 117.51276 * 0.02562 * 12 10 9 22 22 H 1.09009 * 113.64453 * 80.39320 * 14 13 10 23 23 H 1.08997 * 113.72782 * 309.40095 * 14 13 10 24 24 H 1.09002 * 113.58838 * 139.57331 * 15 14 13 25 25 H 0.96697 * 114.00281 * 178.55127 * 16 15 14 26 26 H 1.08994 * 113.64612 * 50.62436 * 17 13 10 27 27 H 1.09008 * 113.69177 * 279.57567 * 17 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 3.1336 -3.5794 0.1550 12 6 1.5578 -4.7615 -0.9378 13 6 1.3487 -4.8800 0.5677 14 6 0.0310 -4.9436 1.3476 15 6 0.4363 -6.3721 1.7515 16 8 -0.0122 -7.3741 0.8367 17 6 1.8972 -5.9436 1.5277 18 1 -0.4850 0.8402 0.0004 19 1 0.3555 -2.3880 -0.0016 20 1 2.3046 -5.4104 -1.3951 21 1 0.6842 -4.5438 -1.5523 22 1 -0.8548 -4.9033 0.7134 23 1 -0.0164 -4.2489 2.1862 24 1 0.2067 -6.6137 2.7893 25 1 0.2581 -8.2719 1.0731 26 1 2.3718 -5.5273 2.4163 27 1 2.5058 -6.7038 1.0378 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642835708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:09 Heat of formation + Delta-G solvation = 11.034472 kcal Electronic energy + Delta-G solvation = -10937.637854 eV Core-core repulsion = 8890.471473 eV Total energy + Delta-G solvation = -2047.166381 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.23633 -35.92585 -33.69663 -31.81434 -29.25908 -25.40720 -23.75157 -22.11371 -20.40639 -18.19280 -17.38576 -16.59542 -15.19812 -14.69036 -14.17345 -13.85521 -13.05287 -12.71818 -12.52173 -11.93839 -11.34114 -11.15369 -10.89604 -10.80042 -10.38586 -10.14654 -9.96376 -9.75868 -9.53838 -9.03089 -8.60468 -6.85048 -5.82921 -3.10545 3.40982 3.46630 3.49292 4.29616 4.52774 4.68610 4.92408 5.06730 5.22304 5.42597 5.55766 5.77783 5.91919 6.05002 6.11637 6.20100 6.38165 6.51698 6.59602 6.67699 6.81984 6.98221 7.67435 7.82786 8.35745 9.46519 10.04010 10.38735 11.39303 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.085063 B = 0.009059 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.089305 B = 3090.058196 C = 3179.018965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.685 5.685 10 C 0.161 3.839 11 H 0.100 0.900 12 C -0.192 4.192 13 C -0.191 4.191 14 C -0.085 4.085 15 C 0.079 3.921 16 O -0.549 6.549 17 C -0.127 4.127 18 H 0.257 0.743 19 H 0.388 0.612 20 H 0.079 0.921 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.371 0.629 26 H 0.085 0.915 27 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 -11.394 3.367 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.319 5.319 10 C 0.047 3.953 11 H 0.118 0.882 12 C -0.234 4.234 13 C -0.195 4.195 14 C -0.122 4.122 15 C 0.020 3.980 16 O -0.353 6.353 17 C -0.165 4.165 18 H 0.067 0.933 19 H 0.222 0.778 20 H 0.098 0.902 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.217 0.783 26 H 0.103 0.897 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.426 -10.624 3.075 11.323 hybrid contribution 0.281 0.300 0.213 0.463 sum 2.707 -10.324 3.287 11.168 Atomic orbital electron populations 1.69690 1.05221 1.25842 1.57004 1.24806 0.95565 0.97931 1.02455 0.86053 0.78809 0.83705 0.77227 1.20392 1.21737 1.21756 1.19372 0.91269 0.83784 1.43356 0.90705 1.41976 1.05858 0.99180 1.84933 1.20879 0.94565 0.81859 0.97998 0.88225 1.23451 1.03424 1.06095 0.90404 1.22677 0.98417 1.03114 0.95250 1.22354 0.97006 0.92860 0.99992 1.22711 0.94752 0.89488 0.91017 1.86523 1.78339 1.18196 1.52222 1.23097 0.96350 0.97822 0.99185 0.93349 0.77822 0.90221 0.89680 0.91333 0.88700 0.92255 0.78255 0.89663 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.58 15 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 15 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 7 C -0.25 -6.96 9.98 -15.06 -0.15 -7.11 15 8 H 0.08 2.02 7.82 -52.49 -0.41 1.61 15 9 N -0.69 -17.91 5.60 -53.63 -0.30 -18.21 15 10 C 0.16 3.46 6.62 -68.14 -0.45 3.01 15 11 H 0.10 2.05 8.12 -51.93 -0.42 1.63 15 12 C -0.19 -3.73 10.46 -26.94 -0.28 -4.02 15 13 C -0.19 -3.54 2.96 -154.71 -0.46 -4.00 15 14 C -0.08 -1.50 7.91 -26.14 -0.21 -1.71 15 15 C 0.08 1.15 5.26 -25.81 -0.14 1.01 15 16 O -0.55 -7.86 13.60 -35.23 -0.48 -8.34 15 17 C -0.13 -1.88 7.94 -26.05 -0.21 -2.09 15 18 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 19 H 0.39 10.75 8.02 -40.82 -0.33 10.42 15 20 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 21 H 0.08 1.76 8.14 -51.93 -0.42 1.33 15 22 H 0.07 1.29 8.14 -51.92 -0.42 0.87 15 23 H 0.09 1.69 8.14 -51.93 -0.42 1.26 15 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 25 H 0.37 3.35 9.12 45.56 0.42 3.77 15 26 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15 27 H 0.06 0.87 8.14 -51.92 -0.42 0.45 15 LS Contribution 238.14 15.07 3.59 3.59 Total: -1.00 -31.35 238.14 -6.31 -37.67 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -2.84 Total: 10.85 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -1.99 Total: -15.31 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.42 Total: -45.79 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.48 Total: -8.34 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.35 -6.31 -37.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642835708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.702 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds