Wall clock time and date at job start Mon Mar 30 2020 20:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47131 * 300.00310 * 3 2 1 6 6 H 1.48504 * 109.46920 * 59.99992 * 3 2 1 7 7 C 1.38810 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99724 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99797 * 179.97438 * 9 7 2 11 11 H 1.08996 * 115.58107 * 9.22854 * 10 9 7 12 12 C 1.53125 * 117.51248 * 223.45824 * 10 9 7 13 13 C 1.52460 * 117.51374 * 154.99665 * 10 9 7 14 14 C 1.53255 * 128.58417 * 349.84575 * 13 10 9 15 15 C 1.53886 * 86.88455 * 194.88651 * 14 13 10 16 16 O 1.42894 * 113.59150 * 270.31574 * 15 14 13 17 17 C 1.53419 * 128.60798 * 224.96037 * 13 10 9 18 18 H 0.97008 * 119.99555 * 359.97438 * 1 2 3 19 19 H 0.96994 * 120.00377 * 359.97438 * 9 7 2 20 20 H 1.09000 * 117.51199 * 145.10051 * 12 10 9 21 21 H 1.09001 * 117.51276 * 0.02562 * 12 10 9 22 22 H 1.09009 * 113.64453 * 80.39320 * 14 13 10 23 23 H 1.08997 * 113.72782 * 309.40095 * 14 13 10 24 24 H 1.09002 * 113.58838 * 139.57331 * 15 14 13 25 25 H 0.96697 * 114.00281 * 178.55127 * 16 15 14 26 26 H 1.08994 * 113.64612 * 50.62436 * 17 13 10 27 27 H 1.09008 * 113.69177 * 279.57567 * 17 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 3.1336 -3.5794 0.1550 12 6 1.5578 -4.7615 -0.9378 13 6 1.3487 -4.8800 0.5677 14 6 0.0310 -4.9436 1.3476 15 6 0.4363 -6.3721 1.7515 16 8 -0.0122 -7.3741 0.8367 17 6 1.8972 -5.9436 1.5277 18 1 -0.4850 0.8402 0.0004 19 1 0.3555 -2.3880 -0.0016 20 1 2.3046 -5.4104 -1.3951 21 1 0.6842 -4.5438 -1.5523 22 1 -0.8548 -4.9033 0.7134 23 1 -0.0164 -4.2489 2.1862 24 1 0.2067 -6.6137 2.7893 25 1 0.2581 -8.2719 1.0731 26 1 2.3718 -5.5273 2.4163 27 1 2.5058 -6.7038 1.0378 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642835708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:09 Heat of formation + Delta-G solvation = -12.410301 kcal Electronic energy + Delta-G solvation = -10938.654496 eV Core-core repulsion = 8890.471473 eV Total energy + Delta-G solvation = -2048.183022 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.59597 -37.35785 -35.44738 -33.49257 -31.18803 -26.72769 -25.82657 -23.38198 -22.09823 -19.61634 -19.27558 -17.89469 -16.92823 -16.28759 -15.75592 -15.37597 -14.81224 -14.16821 -14.00056 -13.43206 -13.01733 -12.99968 -12.64508 -12.44137 -12.11303 -11.90157 -11.75263 -11.33438 -10.86110 -10.60002 -10.41373 -8.83526 -7.99930 -5.28434 1.47129 1.48369 1.59071 2.52293 3.01920 3.28421 3.44757 3.52391 3.76331 3.96262 4.00333 4.30028 4.40330 4.60549 4.83059 4.86720 4.92344 4.96304 5.19050 5.28928 5.30276 5.47564 5.50193 6.21866 7.01345 7.26841 8.00976 8.25460 9.23832 Molecular weight = 183.10amu Principal moments of inertia in cm(-1) A = 0.085063 B = 0.009059 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.089305 B = 3090.058196 C = 3179.018965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.075 4.075 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.704 5.704 10 C 0.127 3.873 11 H 0.107 0.893 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.102 4.102 15 C 0.097 3.903 16 O -0.568 6.568 17 C -0.113 4.113 18 H 0.253 0.747 19 H 0.374 0.626 20 H 0.105 0.895 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.397 0.603 26 H 0.099 0.901 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 -12.848 4.113 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.338 5.338 10 C 0.016 3.984 11 H 0.125 0.875 12 C -0.225 4.225 13 C -0.187 4.187 14 C -0.140 4.140 15 C 0.038 3.962 16 O -0.377 6.377 17 C -0.151 4.151 18 H 0.062 0.938 19 H 0.205 0.795 20 H 0.123 0.877 21 H 0.083 0.917 22 H 0.065 0.935 23 H 0.107 0.893 24 H 0.111 0.889 25 H 0.247 0.753 26 H 0.117 0.883 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.865 -12.156 3.824 13.316 hybrid contribution -0.159 0.630 -0.045 0.651 sum 3.706 -11.526 3.778 12.683 Atomic orbital electron populations 1.69854 1.06900 1.26311 1.59103 1.25678 0.96430 1.01461 1.03169 0.84962 0.78302 0.79111 0.76678 1.18628 1.22031 1.21829 1.19796 0.91810 0.84816 1.41698 0.89906 1.42078 1.05293 1.00442 1.86003 1.21136 0.94933 0.81253 1.01081 0.87486 1.23357 1.02984 1.04981 0.91175 1.22874 0.99140 1.01518 0.95159 1.22474 0.95818 0.96130 0.99557 1.22523 0.93632 0.87563 0.92436 1.86464 1.78616 1.19873 1.52700 1.23127 0.97083 0.96474 0.98375 0.93820 0.79476 0.87661 0.91704 0.93512 0.89261 0.88940 0.75301 0.88256 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.73 13.06 21.65 0.28 -60.45 15 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 15 3 Si 0.98 46.38 29.55 68.60 2.03 48.41 15 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 15 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 15 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 15 7 C -0.25 -14.21 9.98 84.03 0.84 -13.37 15 8 H 0.08 4.45 7.82 -2.91 -0.02 4.43 15 9 N -0.70 -37.55 5.60 -323.59 -1.81 -39.36 15 10 C 0.13 5.43 6.62 44.85 0.30 5.73 15 11 H 0.11 4.32 8.12 -2.39 -0.02 4.30 15 12 C -0.18 -6.99 10.46 30.46 0.32 -6.67 15 13 C -0.18 -6.55 2.96 -52.32 -0.15 -6.70 15 14 C -0.10 -3.55 7.91 30.98 0.25 -3.31 15 15 C 0.10 2.49 5.26 31.19 0.16 2.66 15 16 O -0.57 -14.39 13.60 -148.98 -2.03 -16.42 15 17 C -0.11 -2.93 7.94 31.04 0.25 -2.69 15 18 H 0.25 15.20 8.31 -92.70 -0.77 14.43 15 19 H 0.37 21.54 8.02 -92.71 -0.74 20.80 15 20 H 0.11 3.41 8.14 -2.39 -0.02 3.39 15 21 H 0.06 2.71 8.14 -2.39 -0.02 2.69 15 22 H 0.05 1.79 8.14 -2.38 -0.02 1.77 15 23 H 0.09 3.17 8.14 -2.39 -0.02 3.15 15 24 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.40 5.51 9.12 -74.06 -0.68 4.84 15 26 H 0.10 2.36 8.14 -2.39 -0.02 2.34 15 27 H 0.08 1.89 8.14 -2.38 -0.02 1.87 15 Total: -1.00 -67.86 238.14 0.65 -67.22 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.25 Total: 28.88 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 2.42 Total: -28.28 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -1.53 Total: -99.81 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -2.03 Total: -16.42 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -67.86 0.65 -67.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642835708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.805 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds