Wall clock time and date at job start Mon Mar 30 2020 20:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.49371 * 2 1 4 4 C 1.53625 * 109.43329 * 120.21883 * 2 1 3 5 5 N 1.46921 * 108.54431 * 174.72466 * 4 2 1 6 6 C 1.36934 * 120.63093 * 126.37218 * 5 4 2 7 7 H 1.08000 * 120.00034 * 332.04535 * 6 5 4 8 8 C 1.38812 * 120.00282 * 152.04627 * 6 5 4 9 9 N 1.31621 * 119.99571 * 342.64270 * 8 6 5 10 10 Si 1.86801 * 120.00065 * 162.91965 * 8 6 5 11 11 H 1.48499 * 109.47065 * 179.72148 * 10 8 6 12 12 H 1.48495 * 109.46895 * 299.72315 * 10 8 6 13 13 H 1.48496 * 109.47025 * 59.72415 * 10 8 6 14 14 C 1.46925 * 118.73991 * 306.09306 * 5 4 2 15 15 C 1.53198 * 108.77140 * 53.86292 * 14 5 4 16 16 C 1.53038 * 109.31330 * 305.36224 * 15 14 5 17 17 H 1.09000 * 109.46247 * 301.34826 * 16 15 14 18 18 N 1.46902 * 109.46026 * 181.38774 * 16 15 14 19 19 H 1.08999 * 109.46971 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47262 * 300.06679 * 1 2 3 21 21 H 1.08999 * 109.46972 * 60.06866 * 1 2 3 22 22 H 1.09004 * 109.73719 * 54.98927 * 4 2 1 23 23 H 1.09001 * 109.66651 * 294.42577 * 4 2 1 24 24 H 0.97004 * 119.99553 * 180.02562 * 9 8 6 25 25 H 1.08997 * 109.58937 * 173.64726 * 14 5 4 26 26 H 1.08999 * 109.58823 * 293.93486 * 14 5 4 27 27 H 1.08996 * 109.49676 * 65.31836 * 15 14 5 28 28 H 1.09001 * 109.49364 * 185.41190 * 15 14 5 29 29 H 1.00898 * 110.99634 * 59.99986 * 18 16 15 30 30 H 1.00902 * 110.99589 * 183.95243 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7292 1.2519 5 7 3.5046 -0.8293 1.1694 6 6 4.2936 -0.3798 2.1944 7 1 3.9468 0.4199 2.8320 8 6 5.5391 -0.9519 2.4139 9 7 5.8278 -2.1225 1.8859 10 14 6.8026 -0.0642 3.4651 11 1 8.0388 -0.8826 3.5500 12 1 7.1203 1.2506 2.8523 13 1 6.2529 0.1451 4.8286 14 6 4.1053 -1.4267 -0.0310 15 6 3.5709 -0.6947 -1.2661 16 6 2.0408 -0.7228 -1.2485 17 1 1.6967 -1.7569 -1.2357 18 7 1.5252 -0.0505 -2.4486 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5149 0.8894 21 1 -0.3633 0.5128 -0.8906 22 1 1.6085 -1.7286 1.2981 23 1 1.7629 -0.1668 2.1432 24 1 6.6981 -2.5225 2.0396 25 1 5.1896 -1.3246 0.0135 26 1 3.8396 -2.4824 -0.0859 27 1 3.9160 0.3392 -1.2539 28 1 3.9335 -1.1892 -2.1673 29 1 1.8477 -0.5099 -3.2870 30 1 0.5176 0.0012 -2.4292 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086886804.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:11 Heat of formation + Delta-G solvation = 9.017878 kcal Electronic energy + Delta-G solvation = -11830.684819 eV Core-core repulsion = 9853.838176 eV Total energy + Delta-G solvation = -1976.846643 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.09991 -34.31599 -31.88804 -31.06302 -28.87824 -25.78828 -24.37809 -21.61582 -20.74511 -18.85296 -16.59931 -15.47855 -14.83672 -14.56932 -13.76792 -13.68868 -12.98371 -12.53699 -12.43292 -12.08658 -11.36843 -11.21871 -10.96527 -10.70631 -10.57049 -10.26788 -10.10440 -9.84498 -9.48575 -9.39646 -8.41718 -8.28404 -6.62551 -5.74488 -3.16286 3.41743 3.47022 3.49031 4.53700 4.93170 5.33460 5.42489 5.48564 5.61725 5.70993 5.95162 6.11166 6.19568 6.35899 6.41405 6.54645 6.68227 6.74323 6.78072 6.90111 7.10817 7.44542 7.55899 7.71803 7.78152 7.84722 8.49780 9.25941 9.89794 10.46888 11.34086 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.063667 B = 0.012152 C = 0.011152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.685664 B = 2303.654775 C = 2510.160127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.073 0.927 4 C 0.152 3.848 5 N -0.592 5.592 6 C -0.251 4.251 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.905 5.905 10 Si 0.903 3.097 11 H -0.291 1.291 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.171 3.829 15 C -0.132 4.132 16 C 0.103 3.897 17 H 0.024 0.976 18 N -0.851 5.851 19 H 0.046 0.954 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.015 0.985 23 H 0.054 0.946 24 H 0.254 0.746 25 H 0.088 0.912 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.332 0.668 30 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 2.110 -5.485 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 H 0.091 0.909 4 C 0.025 3.975 5 N -0.315 5.315 6 C -0.381 4.381 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.549 5.549 10 Si 0.733 3.267 11 H -0.217 1.217 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.045 3.955 15 C -0.172 4.172 16 C -0.008 4.008 17 H 0.042 0.958 18 N -0.381 5.381 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.144 0.856 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.691 2.635 -5.177 8.861 hybrid contribution 0.197 -0.568 0.272 0.659 sum -6.494 2.068 -4.905 8.397 Atomic orbital electron populations 1.21807 0.96691 1.00820 1.01025 1.21764 0.93683 1.00807 0.95964 0.90882 1.21032 0.85842 0.96283 0.94358 1.44058 0.99377 1.71514 1.16504 1.19166 0.98265 1.12207 1.08466 0.91736 1.25030 0.99918 0.95396 0.99386 1.70034 1.21950 1.14632 1.48305 0.86363 0.81028 0.79127 0.80231 1.21660 1.21016 1.20902 1.20781 0.99425 0.92777 0.82549 1.22233 0.93457 1.01887 0.99580 1.21288 0.96073 0.94066 0.89348 0.95769 1.58907 1.14547 1.60085 1.04512 0.93480 0.92873 0.93117 0.96686 0.92752 0.93636 0.89343 0.96695 0.92004 0.93744 0.85626 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.84 37.16 0.33 -1.79 16 2 C -0.10 -1.87 2.61 -90.27 -0.24 -2.11 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.15 3.32 5.83 -3.49 -0.02 3.30 16 5 N -0.59 -15.40 2.99 -172.06 -0.51 -15.91 16 6 C -0.25 -7.10 9.59 -15.06 -0.14 -7.25 16 7 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 8 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 9 N -0.90 -26.77 11.19 55.49 0.62 -26.14 16 10 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.17 4.24 5.31 -3.71 -0.02 4.22 16 15 C -0.13 -2.69 5.66 -26.61 -0.15 -2.84 16 16 C 0.10 1.85 2.74 -67.67 -0.19 1.66 16 17 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 18 N -0.85 -12.66 9.21 -4.63 -0.04 -12.70 16 19 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 22 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 24 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.33 4.38 9.04 -39.29 -0.36 4.03 16 30 H 0.33 4.30 6.99 -39.29 -0.27 4.02 16 LS Contribution 237.64 15.07 3.58 3.58 Total: -1.00 -29.75 237.64 -6.52 -36.28 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.63 Total: 2.70 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.51 Total: -4.86 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.06 Total: -54.76 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.75 -6.52 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086886804.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.293 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds