Wall clock time and date at job start Mon Mar 30 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42896 * 109.47503 * 2 1 4 4 C 1.42903 * 114.00054 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.01514 * 331.38515 * 4 3 2 6 6 C 1.54263 * 110.07609 * 92.80614 * 4 3 2 7 7 C 1.54898 * 104.19381 * 142.91537 * 6 4 3 8 8 C 1.55019 * 102.75538 * 322.04538 * 7 6 4 9 9 C 1.53877 * 110.02704 * 209.99797 * 4 3 2 10 10 H 1.09000 * 110.03754 * 359.97438 * 9 4 3 11 11 C 1.50702 * 110.03059 * 121.37784 * 9 4 3 12 12 H 1.08002 * 120.00299 * 359.31261 * 11 9 4 13 13 C 1.37884 * 119.99942 * 179.02820 * 11 9 4 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 H 1.09004 * 109.47284 * 300.00120 * 1 2 3 20 20 H 1.09006 * 109.47247 * 59.99982 * 1 2 3 21 21 H 1.09002 * 109.47646 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47284 * 239.99880 * 2 1 3 23 23 H 1.08999 * 109.47064 * 120.00371 * 2 1 3 24 24 H 1.08992 * 110.48429 * 261.59197 * 6 4 3 25 25 H 1.09002 * 110.48559 * 24.10904 * 6 4 3 26 26 H 1.08998 * 110.75244 * 80.36986 * 7 6 4 27 27 H 1.09001 * 110.75394 * 203.74221 * 7 6 4 28 28 H 1.09004 * 110.50282 * 279.29789 * 8 7 6 29 29 H 1.09000 * 110.51986 * 156.61500 * 8 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8739 0.5931 0.4896 6 6 3.9526 1.5727 -1.4479 7 6 5.1331 2.5707 -1.3495 8 6 4.6236 3.6021 -0.3105 9 6 3.8577 2.7496 0.7222 10 1 2.9783 3.2896 1.0731 11 6 4.7567 2.4163 1.8849 12 1 4.9972 1.3863 2.1037 13 6 5.2770 3.4265 2.6659 14 7 4.9842 4.6807 2.3994 15 14 6.3975 3.0138 4.1023 16 1 7.5960 2.2924 3.6039 17 1 6.8190 4.2676 4.7774 18 1 5.6678 2.1534 5.0681 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 4.3011 0.6034 -1.8043 25 1 3.1747 1.9624 -2.1046 26 1 6.0322 2.0710 -0.9891 27 1 5.3152 3.0496 -2.3116 28 1 3.9545 4.3213 -0.7829 29 1 5.4618 4.1133 0.1631 30 1 5.3499 5.3914 2.9490 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592773.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:53 Heat of formation + Delta-G solvation = -70.381021 kcal Electronic energy + Delta-G solvation = -11597.734094 eV Core-core repulsion = 9585.151705 eV Total energy + Delta-G solvation = -2012.582389 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.12883 -35.41669 -32.34266 -30.63541 -28.03647 -26.45509 -23.93417 -22.27498 -19.78649 -18.97388 -16.50172 -15.70063 -15.00377 -14.76108 -13.95805 -13.70530 -12.77042 -12.40920 -12.30551 -11.90630 -11.46227 -11.17661 -10.93409 -10.57657 -10.52425 -10.31792 -9.94661 -9.91079 -9.55105 -9.44444 -8.77291 -8.51291 -8.28923 -5.96480 -4.00825 3.33658 3.38342 3.40497 4.38981 4.56161 5.34546 5.40250 5.57044 5.69272 5.75983 5.79199 5.88180 6.07918 6.24835 6.28581 6.42099 6.52992 6.60139 6.78780 6.89150 6.99909 7.28774 7.44479 7.69978 7.85798 8.00923 8.27914 8.51903 9.00965 9.61719 11.11643 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.041184 B = 0.012657 C = 0.010846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.704551 B = 2211.709109 C = 2580.950011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.088 3.912 5 H 0.054 0.946 6 C -0.143 4.143 7 C -0.120 4.120 8 C -0.100 4.100 9 C 0.049 3.951 10 H 0.039 0.961 11 C -0.510 4.510 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.887 5.887 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 H 0.061 0.939 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.036 0.964 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -6.463 -4.994 8.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.031 3.969 5 H 0.072 0.928 6 C -0.181 4.181 7 C -0.157 4.157 8 C -0.138 4.138 9 C 0.031 3.969 10 H 0.057 0.943 11 C -0.549 4.549 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.526 5.526 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 H 0.080 0.920 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.256 -6.112 -4.920 8.495 hybrid contribution 0.818 -0.471 0.775 1.221 sum -2.438 -6.582 -4.146 8.152 Atomic orbital electron populations 1.21724 0.94785 1.01270 1.02816 1.22342 0.94778 0.85834 0.99136 1.87961 1.23098 1.24325 1.94896 1.23266 0.78415 1.01124 0.94062 0.92835 1.22846 0.98617 0.98509 0.98111 1.22431 0.97167 0.97587 0.98532 1.22274 1.00600 0.96070 0.94821 1.19311 0.95625 0.89348 0.92620 0.94263 1.21161 1.29081 0.92647 1.11972 0.92911 1.24952 0.96573 0.95073 0.97428 1.69976 1.44545 0.98771 1.39263 0.86695 0.81128 0.77599 0.82785 1.20316 1.21280 1.20328 0.91959 0.92316 0.91980 0.94565 0.93971 0.93548 0.91913 0.92086 0.93604 0.95031 0.90161 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 37.15 0.38 -1.67 16 2 C 0.06 0.95 6.50 37.15 0.24 1.19 16 3 O -0.38 -8.25 9.90 -35.23 -0.35 -8.60 16 4 C 0.09 1.98 3.03 -25.61 -0.08 1.90 16 5 H 0.05 1.20 7.03 -51.93 -0.37 0.83 16 6 C -0.14 -2.80 6.56 -25.07 -0.16 -2.96 16 7 C -0.12 -2.44 6.91 -24.66 -0.17 -2.61 16 8 C -0.10 -2.43 5.92 -25.00 -0.15 -2.58 16 9 C 0.05 1.30 2.64 -90.65 -0.24 1.06 16 10 H 0.04 1.15 7.95 -51.93 -0.41 0.74 16 11 C -0.51 -14.27 8.51 -34.44 -0.29 -14.57 16 12 H 0.05 1.45 7.33 -52.49 -0.38 1.06 16 13 C 0.06 1.72 5.07 -17.82 -0.09 1.63 16 14 N -0.89 -25.85 11.90 55.43 0.66 -25.19 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 2.15 6.46 -51.93 -0.34 1.82 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 246.47 15.07 3.71 3.71 Total: -1.00 -29.18 246.47 -6.41 -35.59 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.85 Total: -3.34 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -0.56 Total: -18.61 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.66 Total: -25.19 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.35 Total: -8.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.18 -6.41 -35.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592773.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds