Wall clock time and date at job start Mon Mar 30 2020 20:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42896 * 109.47503 * 2 1 4 4 C 1.42903 * 114.00054 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.01514 * 331.38515 * 4 3 2 6 6 C 1.54263 * 110.07609 * 92.80614 * 4 3 2 7 7 C 1.54898 * 104.19381 * 142.91537 * 6 4 3 8 8 C 1.55019 * 102.75538 * 322.04538 * 7 6 4 9 9 C 1.53877 * 110.02704 * 209.99797 * 4 3 2 10 10 H 1.09000 * 110.03754 * 359.97438 * 9 4 3 11 11 C 1.50702 * 110.03059 * 121.37784 * 9 4 3 12 12 H 1.08002 * 120.00299 * 359.31261 * 11 9 4 13 13 C 1.37884 * 119.99942 * 179.02820 * 11 9 4 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 H 1.09004 * 109.47284 * 300.00120 * 1 2 3 20 20 H 1.09006 * 109.47247 * 59.99982 * 1 2 3 21 21 H 1.09002 * 109.47646 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47284 * 239.99880 * 2 1 3 23 23 H 1.08999 * 109.47064 * 120.00371 * 2 1 3 24 24 H 1.08992 * 110.48429 * 261.59197 * 6 4 3 25 25 H 1.09002 * 110.48559 * 24.10904 * 6 4 3 26 26 H 1.08998 * 110.75244 * 80.36986 * 7 6 4 27 27 H 1.09001 * 110.75394 * 203.74221 * 7 6 4 28 28 H 1.09004 * 110.50282 * 279.29789 * 8 7 6 29 29 H 1.09000 * 110.51986 * 156.61500 * 8 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.8739 0.5931 0.4896 6 6 3.9526 1.5727 -1.4479 7 6 5.1331 2.5707 -1.3495 8 6 4.6236 3.6021 -0.3105 9 6 3.8577 2.7496 0.7222 10 1 2.9783 3.2896 1.0731 11 6 4.7567 2.4163 1.8849 12 1 4.9972 1.3863 2.1037 13 6 5.2770 3.4265 2.6659 14 7 4.9842 4.6807 2.3994 15 14 6.3975 3.0138 4.1023 16 1 7.5960 2.2924 3.6039 17 1 6.8190 4.2676 4.7774 18 1 5.6678 2.1534 5.0681 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 4.3011 0.6034 -1.8043 25 1 3.1747 1.9624 -2.1046 26 1 6.0322 2.0710 -0.9891 27 1 5.3152 3.0496 -2.3116 28 1 3.9545 4.3213 -0.7829 29 1 5.4618 4.1133 0.1631 30 1 5.3499 5.3914 2.9490 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592773.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:53 Heat of formation + Delta-G solvation = -87.955550 kcal Electronic energy + Delta-G solvation = -11598.496183 eV Core-core repulsion = 9585.151705 eV Total energy + Delta-G solvation = -2013.344478 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.82780 -37.11151 -34.40566 -31.94229 -29.99087 -28.20286 -25.95582 -23.57452 -21.49367 -20.87668 -18.44742 -17.46978 -16.77602 -16.42468 -15.68357 -15.34057 -14.32586 -14.27850 -13.72068 -13.45470 -13.12151 -12.85313 -12.71785 -12.38541 -12.14968 -11.96706 -11.76007 -11.62220 -11.41656 -11.21209 -10.84373 -10.42411 -10.16628 -8.11558 -6.23791 1.40916 1.42911 1.50444 2.41775 3.01218 3.19008 3.97845 4.05174 4.23293 4.31102 4.41140 4.53916 4.61091 4.82946 4.90850 4.95005 5.04596 5.06612 5.16073 5.23496 5.30034 5.46336 5.52616 5.61402 5.82863 5.96758 6.32657 6.64258 6.86667 7.42885 8.96350 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.041184 B = 0.012657 C = 0.010846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.704551 B = 2211.709109 C = 2580.950011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.409 6.409 4 C 0.093 3.907 5 H 0.050 0.950 6 C -0.132 4.132 7 C -0.110 4.110 8 C -0.098 4.098 9 C 0.040 3.960 10 H -0.009 1.009 11 C -0.529 4.529 12 H 0.054 0.946 13 C 0.010 3.990 14 N -0.918 5.918 15 Si 0.957 3.043 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.273 1.273 19 H 0.050 0.950 20 H 0.061 0.939 21 H 0.095 0.905 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.049 0.951 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 -8.138 -5.749 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.329 6.329 4 C 0.035 3.965 5 H 0.068 0.932 6 C -0.169 4.169 7 C -0.148 4.148 8 C -0.136 4.136 9 C 0.021 3.979 10 H 0.009 0.991 11 C -0.566 4.566 12 H 0.072 0.928 13 C -0.189 4.189 14 N -0.557 5.557 15 Si 0.782 3.218 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.198 1.198 19 H 0.069 0.931 20 H 0.080 0.920 21 H 0.114 0.886 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.908 -7.803 -5.683 10.082 hybrid contribution 0.632 0.053 1.026 1.206 sum -2.275 -7.751 -4.658 9.325 Atomic orbital electron populations 1.21742 0.92545 1.03379 1.02428 1.22674 0.96661 0.83704 1.00042 1.87920 1.22384 1.27500 1.95135 1.23028 0.79304 0.98580 0.95548 0.93190 1.22768 0.98144 0.99912 0.96103 1.22369 0.97377 0.96582 0.98431 1.22126 0.99240 0.96719 0.95563 1.19321 0.93850 0.91365 0.93364 0.99112 1.21489 1.29468 0.92759 1.12934 0.92826 1.25788 0.98033 0.94886 1.00146 1.70118 1.45553 0.99705 1.40360 0.85635 0.79340 0.77506 0.79338 1.19127 1.20912 1.19799 0.93114 0.91965 0.88590 0.92419 0.94204 0.90306 0.91120 0.92084 0.90613 0.95568 0.93182 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 10.28 71.98 0.74 -2.92 16 2 C 0.05 1.45 6.50 71.98 0.47 1.92 16 3 O -0.41 -17.46 9.90 -148.98 -1.47 -18.93 16 4 C 0.09 4.09 3.03 31.32 0.09 4.19 16 5 H 0.05 2.20 7.03 -2.39 -0.02 2.18 16 6 C -0.13 -4.80 6.56 31.67 0.21 -4.59 16 7 C -0.11 -4.29 6.91 31.93 0.22 -4.07 16 8 C -0.10 -4.87 5.92 31.71 0.19 -4.69 16 9 C 0.04 2.13 2.64 -10.81 -0.03 2.10 16 10 H -0.01 -0.58 7.95 -2.39 -0.02 -0.60 16 11 C -0.53 -30.08 8.51 25.60 0.22 -29.86 16 12 H 0.05 2.96 7.33 -2.91 -0.02 2.94 16 13 C 0.01 0.58 5.07 84.66 0.43 1.01 16 14 N -0.92 -55.00 11.90 21.45 0.26 -54.74 16 15 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 20 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 21 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 2.75 6.46 -2.39 -0.02 2.74 16 30 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -63.85 246.47 4.43 -59.43 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.08 Total: 4.86 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 2.54 Total: -36.92 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.26 Total: -54.74 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.47 Total: -18.93 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.85 4.43 -59.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592773.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.530 kcal (2) G-P(sol) polarization free energy of solvation -63.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds