Wall clock time and date at job start Mon Mar 30 2020 20:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47183 * 2 1 4 4 C 1.50698 * 109.47140 * 240.00040 * 2 1 3 5 5 H 1.08004 * 120.00027 * 245.38781 * 4 2 1 6 6 C 1.37876 * 119.99902 * 65.38267 * 4 2 1 7 7 N 1.31518 * 120.00343 * 5.14586 * 6 4 2 8 8 Si 1.86807 * 120.00265 * 185.14411 * 6 4 2 9 9 H 1.48494 * 109.47145 * 84.99953 * 8 6 4 10 10 H 1.48497 * 109.47300 * 205.00262 * 8 6 4 11 11 H 1.48503 * 109.46685 * 325.00509 * 8 6 4 12 12 C 1.52996 * 109.47331 * 120.00001 * 2 1 3 13 13 H 1.08997 * 109.52214 * 60.00114 * 12 2 1 14 14 C 1.53178 * 109.52354 * 299.87503 * 12 2 1 15 15 C 1.53178 * 109.03558 * 183.11537 * 14 12 2 16 16 C 1.53092 * 109.16698 * 56.98070 * 15 14 12 17 17 O 1.42908 * 109.41082 * 302.39002 * 16 15 14 18 18 C 1.42907 * 114.15631 * 61.12599 * 17 16 15 19 19 H 1.09000 * 109.46952 * 295.13393 * 1 2 3 20 20 H 1.08994 * 109.47350 * 55.13065 * 1 2 3 21 21 H 1.09000 * 109.47252 * 175.13374 * 1 2 3 22 22 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 23 23 H 1.09003 * 109.54211 * 302.97768 * 14 12 2 24 24 H 1.08995 * 109.54648 * 63.15618 * 14 12 2 25 25 H 1.08998 * 109.52107 * 176.88412 * 15 14 12 26 26 H 1.09005 * 109.52015 * 297.07112 * 15 14 12 27 27 H 1.08993 * 109.48027 * 62.36918 * 16 15 14 28 28 H 1.08998 * 109.48246 * 182.40848 * 16 15 14 29 29 H 1.08998 * 109.54083 * 178.92705 * 18 17 16 30 30 H 1.09008 * 109.42602 * 58.88434 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5796 -1.6365 -1.1337 6 6 1.7932 -0.1782 -2.4797 7 7 1.2165 0.9983 -2.5939 8 14 2.2883 -1.1280 -4.0101 9 1 1.2114 -2.0855 -4.3685 10 1 2.5021 -0.1804 -5.1333 11 1 3.5452 -1.8732 -3.7451 12 6 2.0400 -0.7212 1.2492 13 1 1.6772 -1.7490 1.2500 14 6 1.5327 0.0017 2.5007 15 6 2.1128 -0.6823 3.7425 16 6 3.6409 -0.6803 3.6497 17 8 4.0447 -1.3407 2.4484 18 6 3.5710 -0.7192 1.2519 19 1 -0.3633 0.4365 0.9304 20 1 -0.3634 0.5875 -0.8431 21 1 -0.3634 -1.0240 -0.0872 22 1 1.0486 1.3729 -3.4727 23 1 1.8530 1.0433 2.4751 24 1 0.4442 -0.0443 2.5324 25 1 1.8014 -0.1406 4.6356 26 1 1.7523 -1.7097 3.7942 27 1 4.0031 0.3476 3.6387 28 1 4.0580 -1.2037 4.5101 29 1 3.9367 -1.2703 0.3855 30 1 3.9332 0.3080 1.2091 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382835.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:50 Heat of formation + Delta-G solvation = -74.579958 kcal Electronic energy + Delta-G solvation = -11741.231364 eV Core-core repulsion = 9728.466896 eV Total energy + Delta-G solvation = -2012.764468 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.81843 -35.02367 -32.61392 -31.19611 -28.33189 -25.59180 -23.93340 -22.86292 -20.35988 -18.94740 -16.25644 -15.66198 -15.34777 -14.50731 -14.18548 -13.56878 -13.15817 -12.50481 -12.20777 -12.02572 -11.47592 -11.11636 -10.85747 -10.63585 -10.59881 -10.33035 -10.18317 -9.93623 -9.74094 -9.08179 -8.82805 -8.52577 -8.31914 -5.98658 -4.01906 3.32578 3.38975 3.41937 4.45053 4.48372 5.28504 5.34899 5.36638 5.46422 5.74753 5.79041 6.01761 6.12639 6.24199 6.36574 6.45174 6.55361 6.76811 6.87458 6.96320 7.08753 7.15223 7.34201 7.74396 7.82509 7.99370 8.06432 8.46540 9.02068 9.62384 11.10037 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058653 B = 0.011949 C = 0.010521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.265525 B = 2342.689925 C = 2660.645251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.049 3.951 3 H 0.030 0.970 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C -0.108 4.108 13 H 0.062 0.938 14 C -0.120 4.120 15 C -0.155 4.155 16 C 0.063 3.937 17 O -0.396 6.396 18 C 0.073 3.927 19 H 0.013 0.987 20 H 0.064 0.936 21 H 0.027 0.973 22 H 0.259 0.741 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -1.540 8.720 9.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.030 3.970 3 H 0.048 0.952 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.127 4.127 13 H 0.081 0.919 14 C -0.157 4.157 15 C -0.193 4.193 16 C -0.015 4.015 17 O -0.315 6.315 18 C -0.003 4.003 19 H 0.032 0.968 20 H 0.083 0.917 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.710 -1.568 8.574 8.882 hybrid contribution -0.067 -0.187 -0.947 0.967 sum 1.643 -1.755 7.627 7.997 Atomic orbital electron populations 1.21778 0.99101 0.99281 0.98748 1.18639 0.92181 0.95895 0.90277 0.95154 1.21192 1.35250 1.08031 0.90778 0.92568 1.24965 0.95265 0.94706 0.98943 1.69943 1.43312 1.16162 1.23504 0.86693 0.78991 0.79857 0.82975 1.20686 1.21387 1.19920 1.21806 0.95042 1.00033 0.95817 0.91942 1.21740 1.00536 0.99128 0.94295 1.22206 0.96796 1.01497 0.98784 1.22439 0.94082 0.96847 0.88087 1.87863 1.74852 1.54454 1.14339 1.22723 0.94448 0.97377 0.85713 0.96825 0.91716 0.95400 0.93091 0.92543 0.91725 0.92029 0.91631 0.93918 0.90108 0.88016 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.75 37.16 0.33 -2.81 16 2 C 0.05 1.20 1.77 -91.77 -0.16 1.04 16 3 H 0.03 0.82 8.12 -51.93 -0.42 0.40 16 4 C -0.51 -13.94 7.68 -34.44 -0.26 -14.20 16 5 H 0.06 1.51 6.94 -52.48 -0.36 1.14 16 6 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 7 N -0.89 -25.65 11.98 55.43 0.66 -24.99 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.11 -2.26 1.93 -90.48 -0.17 -2.44 16 13 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.12 -2.12 4.87 -26.55 -0.13 -2.25 16 15 C -0.16 -2.32 6.14 -26.59 -0.16 -2.48 16 16 C 0.06 0.95 6.85 37.21 0.25 1.21 16 17 O -0.40 -7.50 10.76 -35.23 -0.38 -7.88 16 18 C 0.07 1.48 5.83 37.21 0.22 1.70 16 19 H 0.01 0.27 6.26 -51.93 -0.33 -0.05 16 20 H 0.06 1.69 6.84 -51.93 -0.35 1.34 16 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 2.18 6.83 -51.93 -0.35 1.83 16 30 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 237.65 15.07 3.58 3.58 Total: -1.00 -28.34 237.65 -6.02 -34.36 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.68 Total: -2.81 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.19 Total: -18.60 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.66 Total: -24.99 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.38 Total: -7.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -28.34 -6.02 -34.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382835.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.219 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds