Wall clock time and date at job start Mon Mar 30 2020 20:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46668 * 2 1 4 4 H 1.09000 * 109.47161 * 178.77138 * 3 2 1 5 5 C 1.52995 * 109.47268 * 298.77349 * 3 2 1 6 6 C 1.50703 * 109.46922 * 294.98610 * 5 3 2 7 7 H 1.08003 * 120.00118 * 357.19346 * 6 5 3 8 8 C 1.37878 * 119.99983 * 177.19220 * 6 5 3 9 9 N 1.31510 * 120.00058 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99918 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47155 * 90.00460 * 10 8 6 12 12 H 1.48505 * 109.46980 * 209.99873 * 10 8 6 13 13 H 1.48500 * 109.47101 * 329.99929 * 10 8 6 14 14 C 1.53003 * 109.46817 * 58.76963 * 3 2 1 15 15 C 1.54036 * 113.81449 * 156.18814 * 14 3 2 16 16 O 1.44179 * 85.51563 * 223.19847 * 15 14 3 17 17 C 1.44174 * 93.34169 * 24.19268 * 16 15 14 18 18 H 1.09008 * 109.46412 * 185.84606 * 1 2 3 19 19 H 1.08996 * 109.47394 * 305.83883 * 1 2 3 20 20 H 1.08998 * 109.47404 * 65.85243 * 1 2 3 21 21 H 1.08992 * 109.47343 * 240.00726 * 2 1 3 22 22 H 1.08995 * 109.47338 * 119.99666 * 2 1 3 23 23 H 1.09002 * 109.47201 * 54.98637 * 5 3 2 24 24 H 1.09000 * 109.47209 * 174.99209 * 5 3 2 25 25 H 0.97003 * 120.00546 * 179.97438 * 9 8 6 26 26 H 1.09000 * 113.00229 * 288.16964 * 14 3 2 27 27 H 1.09009 * 113.86492 * 337.34087 * 15 14 3 28 28 H 1.08994 * 113.86555 * 109.04880 * 15 14 3 29 29 H 1.09000 * 113.86354 * 221.65939 * 17 16 15 30 30 H 1.09002 * 113.86536 * 89.95918 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1297 1.4428 0.0220 5 6 1.5553 2.1549 -1.2643 6 6 2.1811 1.5111 -2.4747 7 1 2.8917 0.7071 -2.3520 8 6 1.8465 1.9485 -3.7387 9 7 0.9816 2.9278 -3.8881 10 14 2.6217 1.1500 -5.2390 11 1 1.7817 0.0084 -5.6818 12 1 2.7196 2.1470 -6.3354 13 1 3.9802 0.6602 -4.8927 14 6 1.5047 2.1726 1.2335 15 6 2.3609 3.3791 1.6625 16 8 2.1767 2.8883 3.0056 17 6 1.9349 1.5359 2.5685 18 1 -0.3632 -1.0224 0.1047 19 1 -0.3634 0.6017 0.8330 20 1 -0.3634 0.4204 -0.9377 21 1 1.8934 -0.5137 -0.8900 22 1 1.8934 -0.5137 0.8900 23 1 0.4701 2.0773 -1.3318 24 1 1.8426 3.2055 -1.2223 25 1 0.7464 3.2359 -4.7774 26 1 0.4378 2.3874 1.1718 27 1 3.3929 3.3337 1.3141 28 1 1.8884 4.3435 1.4767 29 1 1.1244 1.0385 3.1013 30 1 2.8366 0.9277 2.4968 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260453782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:07 Heat of formation + Delta-G solvation = -57.136261 kcal Electronic energy + Delta-G solvation = -11576.339959 eV Core-core repulsion = 9564.331906 eV Total energy + Delta-G solvation = -2012.008053 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38597 -37.30748 -34.49444 -30.91628 -29.91756 -27.33562 -26.35985 -24.48712 -21.99065 -19.92042 -18.37923 -17.25004 -16.79084 -16.41925 -16.15827 -15.62797 -14.61610 -14.31248 -13.78706 -13.51028 -13.22263 -13.04247 -12.78016 -12.54955 -12.28135 -12.12857 -11.74862 -11.54346 -11.17982 -10.81625 -10.72157 -10.47960 -10.41510 -8.14688 -6.22726 1.40422 1.40718 1.51252 2.43052 2.85099 3.19079 3.48443 3.94491 4.31229 4.36231 4.43522 4.47495 4.57182 4.67907 4.70727 5.01622 5.04373 5.14477 5.17568 5.23074 5.32496 5.36713 5.55236 5.58657 5.69315 5.85792 5.96170 6.33466 6.94011 7.45044 8.96774 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.055596 B = 0.010766 C = 0.009991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.509421 B = 2600.118251 C = 2801.892405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.072 4.072 4 H 0.055 0.945 5 C 0.033 3.967 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.000 4.000 9 N -0.934 5.934 10 Si 0.954 3.046 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.264 1.264 14 C -0.145 4.145 15 C 0.036 3.964 16 O -0.408 6.408 17 C 0.046 3.954 18 H 0.061 0.939 19 H 0.058 0.942 20 H 0.030 0.970 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.001 0.999 24 H -0.017 1.017 25 H 0.260 0.740 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -4.538 8.953 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C -0.090 4.090 4 H 0.074 0.926 5 C -0.004 4.004 6 C -0.563 4.563 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.780 3.220 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.188 1.188 14 C -0.164 4.164 15 C -0.040 4.040 16 O -0.328 6.328 17 C -0.030 4.030 18 H 0.080 0.920 19 H 0.077 0.923 20 H 0.049 0.951 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.020 0.980 24 H 0.002 0.998 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.288 -4.317 9.087 10.142 hybrid contribution 0.145 -0.001 -1.406 1.413 sum 1.433 -4.318 7.681 8.927 Atomic orbital electron populations 1.21737 0.96260 1.01211 1.00892 1.21356 0.96078 0.95580 1.01057 1.21148 0.98668 0.95580 0.93626 0.92609 1.19032 0.95427 0.93784 0.92149 1.21651 1.24533 1.18026 0.92063 0.92334 1.25871 0.95857 0.95726 1.02299 1.70090 1.35099 1.29077 1.23278 0.85610 0.79240 0.78172 0.79025 1.20057 1.21194 1.18834 1.24317 1.00816 0.95783 0.95454 1.24066 1.00118 0.98877 0.80958 1.89563 1.92911 1.23046 1.27273 1.24134 1.01271 0.85287 0.92336 0.92022 0.92276 0.95070 0.93334 0.90858 0.98030 0.99837 0.93106 0.89064 0.89831 0.89380 0.87684 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.25 71.98 0.67 -4.10 16 2 C -0.10 -3.53 5.32 30.60 0.16 -3.37 16 3 C -0.07 -2.74 1.88 -10.79 -0.02 -2.76 16 4 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 5 C 0.03 1.66 4.25 29.85 0.13 1.79 16 6 C -0.52 -28.86 8.34 25.60 0.21 -28.65 16 7 H 0.06 3.10 7.17 -2.91 -0.02 3.08 16 8 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 9 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 10 Si 0.95 44.06 29.54 68.60 2.03 46.08 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 14 C -0.15 -4.74 2.50 -10.09 -0.03 -4.76 16 15 C 0.04 1.16 8.77 72.27 0.63 1.80 16 16 O -0.41 -13.13 12.45 -148.98 -1.86 -14.98 16 17 C 0.05 1.23 7.88 72.27 0.57 1.80 16 18 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 19 H 0.06 1.76 6.42 -2.39 -0.02 1.74 16 20 H 0.03 1.24 6.66 -2.39 -0.02 1.23 16 21 H 0.05 1.86 6.97 -2.39 -0.02 1.84 16 22 H 0.07 2.00 7.46 -2.39 -0.02 1.99 16 23 H 0.00 0.08 6.34 -2.39 -0.02 0.06 16 24 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.09 3.08 7.14 -2.39 -0.02 3.06 16 27 H 0.08 2.59 7.96 -2.38 -0.02 2.57 16 28 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 2.20 8.04 -2.39 -0.02 2.18 16 Total: -1.00 -62.35 243.23 4.34 -58.01 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.10 Total: 4.89 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 2.79 Total: -37.81 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -1.86 Total: -14.98 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.35 4.34 -58.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260453782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.872 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds