Wall clock time and date at job start Mon Mar 30 2020 20:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.42292 * 2 1 4 4 C 1.54910 * 110.37479 * 122.31347 * 2 1 3 5 5 C 1.55132 * 101.65536 * 155.89713 * 4 2 1 6 6 N 1.46898 * 110.70398 * 82.73014 * 5 4 2 7 7 C 1.50699 * 110.85926 * 205.89400 * 5 4 2 8 8 H 1.07998 * 119.99798 * 355.14105 * 7 5 4 9 9 C 1.37877 * 120.00309 * 175.14172 * 7 5 4 10 10 N 1.31521 * 119.99974 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 119.99982 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46992 * 90.00302 * 11 9 7 13 13 H 1.48501 * 109.46759 * 209.99960 * 11 9 7 14 14 H 1.48493 * 109.47094 * 329.99702 * 11 9 7 15 15 C 1.54319 * 103.02328 * 324.34817 * 5 4 2 16 16 N 1.47446 * 107.23045 * 22.27917 * 15 5 4 17 17 C 1.46906 * 110.99747 * 123.25938 * 16 15 5 18 18 H 1.09003 * 109.47224 * 180.85824 * 1 2 3 19 19 H 1.08996 * 109.47366 * 300.85873 * 1 2 3 20 20 H 1.09000 * 109.47371 * 60.86291 * 1 2 3 21 21 H 1.09008 * 110.98693 * 37.80602 * 4 2 1 22 22 H 1.08993 * 111.02319 * 274.00609 * 4 2 1 23 23 H 1.00904 * 111.00189 * 184.94674 * 6 5 4 24 24 H 1.00900 * 111.00065 * 308.89743 * 6 5 4 25 25 H 0.96999 * 119.99558 * 180.02562 * 10 9 7 26 26 H 1.08995 * 109.88733 * 262.87849 * 15 5 4 27 27 H 1.08997 * 109.89248 * 141.68856 * 15 5 4 28 28 H 1.08992 * 109.47459 * 59.87354 * 17 16 15 29 29 H 1.09004 * 109.47040 * 179.87505 * 17 16 15 30 30 H 1.09000 * 109.47033 * 299.87457 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 1.2273 5 6 3.4785 -1.1996 0.7358 6 7 4.4428 -0.1070 0.9206 7 6 3.9435 -2.4441 1.4473 8 1 3.3468 -2.8664 2.2422 9 6 5.1306 -3.0434 1.0833 10 7 5.8570 -2.5294 0.1149 11 14 5.7066 -4.5864 1.9647 12 1 5.1751 -5.7837 1.2651 13 1 7.1909 -4.6315 1.9649 14 1 5.2116 -4.5707 3.3647 15 6 3.2535 -1.4808 -0.7647 16 7 2.0447 -0.7410 -1.1713 17 6 2.3357 0.1716 -2.2851 18 1 -0.3634 -1.0276 0.0154 19 1 -0.3634 0.5271 0.8821 20 1 -0.3634 0.5004 -0.8976 21 1 1.4514 -1.6488 1.4397 22 1 2.1388 -0.1277 2.1005 23 1 5.3413 -0.3476 0.5294 24 1 4.0948 0.7533 0.5246 25 1 6.6920 -2.9513 -0.1413 26 1 3.1055 -2.5489 -0.9237 27 1 4.1118 -1.1335 -1.3399 28 1 2.7008 -0.4007 -3.1379 29 1 1.4265 0.7030 -2.5666 30 1 3.0958 0.8897 -1.9774 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260559247.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:25 Heat of formation + Delta-G solvation = -21.437370 kcal Electronic energy + Delta-G solvation = -11986.153715 eV Core-core repulsion = 10007.986433 eV Total energy + Delta-G solvation = -1978.167282 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.25730 -35.65043 -33.26507 -32.48029 -29.60745 -27.41569 -26.75278 -24.70281 -21.07847 -20.81536 -18.16892 -16.95769 -16.81797 -15.88851 -15.38597 -15.03631 -14.54930 -14.07887 -13.86644 -13.52183 -13.28312 -12.85760 -12.83255 -12.58403 -12.35468 -12.02116 -11.91786 -11.71672 -11.26741 -10.82990 -10.62244 -9.58363 -8.70614 -8.13504 -6.21901 1.41676 1.43438 1.52880 2.43880 3.14224 3.23094 3.98997 4.14969 4.33245 4.40083 4.51308 4.59354 4.67605 4.83792 4.91673 4.94126 5.02891 5.13441 5.24840 5.32707 5.50742 5.55127 5.78053 6.18546 6.27324 6.37154 6.68698 6.98149 7.24965 7.47519 8.94244 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058180 B = 0.013503 C = 0.012565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.152795 B = 2073.159890 C = 2227.937881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.065 3.935 3 H 0.050 0.950 4 C -0.109 4.109 5 C 0.217 3.783 6 N -0.836 5.836 7 C -0.517 4.517 8 H 0.050 0.950 9 C 0.027 3.973 10 N -0.915 5.915 11 Si 0.954 3.046 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.056 3.944 16 N -0.547 5.547 17 C 0.027 3.973 18 H 0.050 0.950 19 H 0.070 0.930 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.065 0.935 23 H 0.344 0.656 24 H 0.304 0.696 25 H 0.262 0.738 26 H 0.034 0.966 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 4.616 -2.086 8.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 H 0.068 0.932 4 C -0.147 4.147 5 C 0.124 3.876 6 N -0.366 5.366 7 C -0.556 4.556 8 H 0.068 0.932 9 C -0.172 4.172 10 N -0.554 5.554 11 Si 0.781 3.219 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.074 4.074 16 N -0.272 5.272 17 C -0.122 4.122 18 H 0.069 0.931 19 H 0.089 0.911 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.160 0.840 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.774 4.118 -1.580 8.084 hybrid contribution 1.404 -0.383 -0.551 1.556 sum -5.370 3.736 -2.131 6.880 Atomic orbital electron populations 1.21616 0.92522 1.01904 1.01943 1.22630 0.96924 0.95102 0.89620 0.93249 1.22727 0.96253 0.98950 0.96787 1.19559 0.88911 0.89408 0.89680 1.59201 1.07382 1.04265 1.65762 1.21230 1.06215 1.09281 1.18892 0.93221 1.25623 0.96444 0.99815 0.95352 1.69839 1.14382 1.41463 1.29729 0.85618 0.77190 0.80031 0.79080 1.20404 1.20956 1.19781 1.23256 0.88538 0.96608 0.99035 1.63562 1.29932 1.25973 1.07716 1.22487 1.00458 0.95087 0.94168 0.93061 0.91065 0.91970 0.92193 0.91663 0.84034 0.88549 0.92895 0.94727 0.95504 0.92245 0.89781 0.96550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.46 9.59 71.98 0.69 -2.77 16 2 C 0.07 2.32 2.73 45.38 0.12 2.44 16 3 H 0.05 1.69 7.41 -2.39 -0.02 1.67 16 4 C -0.11 -4.56 5.56 31.98 0.18 -4.38 16 5 C 0.22 10.66 0.76 3.96 0.00 10.66 16 6 N -0.84 -40.02 8.97 -149.87 -1.34 -41.36 16 7 C -0.52 -28.55 8.10 25.60 0.21 -28.35 16 8 H 0.05 2.76 7.78 -2.91 -0.02 2.74 16 9 C 0.03 1.50 5.27 84.65 0.45 1.94 16 10 N -0.91 -50.68 10.81 21.45 0.23 -50.45 16 11 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 C 0.06 2.68 5.24 86.65 0.45 3.13 16 16 N -0.55 -21.53 5.10 -886.63 -4.52 -26.05 16 17 C 0.03 0.87 9.12 127.69 1.16 2.03 16 18 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 19 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.06 2.57 7.96 -2.38 -0.02 2.55 16 22 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 23 H 0.34 17.83 7.22 -89.69 -0.65 17.18 16 24 H 0.30 12.96 8.26 -89.69 -0.74 12.22 16 25 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.03 1.87 7.82 -2.39 -0.02 1.85 16 27 H 0.03 1.36 7.31 -2.39 -0.02 1.34 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.02 0.53 8.10 -2.39 -0.02 0.51 16 Total: -1.00 -57.51 241.13 -0.61 -58.12 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.27 Total: 29.14 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.27 Total: -15.29 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -5.63 Total: -117.86 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -57.51 -0.61 -58.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260559247.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.681 kcal (2) G-P(sol) polarization free energy of solvation -57.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds