Wall clock time and date at job start Mon Mar 30 2020 20:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86802 * 120.00189 * 2 1 4 4 H 1.48502 * 109.47056 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.46968 * 29.99992 * 3 2 1 6 6 H 1.48494 * 109.47202 * 150.00014 * 3 2 1 7 7 C 1.38633 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99728 * 359.97438 * 7 2 1 9 9 O 1.34919 * 120.00233 * 180.02562 * 7 2 1 10 10 C 1.42900 * 117.00193 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47002 * 29.99982 * 10 9 7 12 12 C 1.52999 * 109.47616 * 270.00250 * 10 9 7 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 N 1.46899 * 109.47394 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 19 19 H 0.97004 * 119.99809 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46929 * 59.99102 * 12 10 9 21 21 H 1.09002 * 109.46716 * 299.99907 * 12 10 9 22 22 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 23 23 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 24 24 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 25 25 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 26 26 H 1.00899 * 110.99492 * 60.00133 * 17 15 14 27 27 H 1.00895 * 110.99738 * 183.95562 * 17 15 14 28 28 H 1.09002 * 109.47153 * 60.00231 * 18 15 14 29 29 H 1.09001 * 109.47289 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3582 -1.2007 0.0011 10 6 4.0069 -2.4739 0.0022 11 1 3.3791 -3.2020 -0.5114 12 6 4.2379 -2.9275 1.4450 13 6 4.9319 -4.2910 1.4461 14 6 6.2768 -4.1793 0.7251 15 6 6.0458 -3.7259 -0.7178 16 1 5.4175 -4.4537 -1.2312 17 7 7.3370 -3.6192 -1.4102 18 6 5.3518 -2.3624 -0.7189 19 1 -0.4850 0.8401 -0.0004 20 1 3.2798 -3.0073 1.9585 21 1 4.8658 -2.1994 1.9586 22 1 4.3037 -5.0189 0.9326 23 1 5.0968 -4.6139 2.4741 24 1 6.9050 -3.4515 1.2385 25 1 6.7710 -5.1509 0.7256 26 1 7.8149 -4.5078 -1.4229 27 1 7.2172 -3.2597 -2.3453 28 1 5.9801 -1.6345 -0.2054 29 1 5.1868 -2.0394 -1.7468 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086407775.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:25:22 Heat of formation + Delta-G solvation = -79.845297 kcal Electronic energy + Delta-G solvation = -11645.837767 eV Core-core repulsion = 9567.419066 eV Total energy + Delta-G solvation = -2078.418702 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10692 -37.66992 -34.38813 -33.84059 -30.98330 -28.85865 -26.52734 -23.30870 -22.48665 -20.85201 -19.65438 -17.74028 -16.52406 -16.31808 -15.94227 -15.56403 -15.34559 -14.83306 -14.33415 -13.89249 -13.64883 -13.26604 -12.84561 -12.58287 -12.38390 -12.04709 -11.82913 -11.73219 -11.43534 -11.26935 -11.02109 -10.32002 -9.60994 -8.27926 -5.96950 1.36382 1.39838 1.59085 2.43002 3.04529 3.15665 3.60105 3.81789 4.08284 4.14581 4.29356 4.38625 4.47367 4.53997 4.60191 4.68895 5.02303 5.11482 5.15834 5.23511 5.25560 5.40545 5.45826 5.61517 6.14880 6.24287 6.65776 7.11708 7.83132 8.88289 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058370 B = 0.011011 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.583493 B = 2542.415820 C = 2769.176292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.016 4.016 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.352 4.352 8 H 0.047 0.953 9 O -0.344 6.344 10 C 0.099 3.901 11 H 0.032 0.968 12 C -0.136 4.136 13 C -0.108 4.108 14 C -0.105 4.105 15 C 0.102 3.898 16 H 0.037 0.963 17 N -0.848 5.848 18 C -0.102 4.102 19 H 0.274 0.726 20 H 0.042 0.958 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.353 0.647 27 H 0.347 0.653 28 H 0.064 0.936 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.914 -8.109 -0.343 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.209 4.209 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.430 4.430 8 H 0.065 0.935 9 O -0.260 6.260 10 C 0.041 3.959 11 H 0.050 0.950 12 C -0.174 4.174 13 C -0.146 4.146 14 C -0.143 4.143 15 C -0.010 4.010 16 H 0.055 0.945 17 N -0.380 5.380 18 C -0.141 4.141 19 H 0.083 0.917 20 H 0.061 0.939 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.168 0.832 27 H 0.160 0.840 28 H 0.083 0.917 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.116 -7.340 0.228 15.912 hybrid contribution -0.939 -0.139 -0.706 1.183 sum 13.177 -7.479 -0.478 15.159 Atomic orbital electron populations 1.69800 1.06871 1.28373 1.55202 1.25193 0.95793 1.01906 0.97998 0.85134 0.78475 0.77923 0.78612 1.19766 1.20409 1.19004 1.20388 0.80003 0.94015 1.48627 0.93504 1.85187 1.18518 1.28613 1.93704 1.21979 0.93031 0.85287 0.95643 0.94959 1.22016 1.00114 0.98388 0.96928 1.21453 0.96288 0.95121 1.01701 1.21525 0.96758 1.02140 0.93830 1.21142 0.89893 0.94157 0.95783 0.94488 1.58619 1.21245 1.34270 1.23843 1.21527 0.94142 0.98463 0.99937 0.91731 0.93927 0.92164 0.91911 0.89836 0.91564 0.89666 0.83247 0.83989 0.91700 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.08 13.97 21.61 0.30 -60.78 15 2 C -0.02 -0.99 5.49 84.82 0.47 -0.53 15 3 Si 0.97 49.05 28.62 68.60 1.96 51.02 15 4 H -0.27 -13.17 7.11 99.48 0.71 -12.47 15 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 6 H -0.27 -13.29 7.11 99.48 0.71 -12.58 15 7 C -0.35 -21.58 10.23 67.91 0.69 -20.88 15 8 H 0.05 3.07 7.88 -2.91 -0.02 3.05 15 9 O -0.34 -18.70 8.26 -81.88 -0.68 -19.37 15 10 C 0.10 4.22 2.65 30.60 0.08 4.31 15 11 H 0.03 1.43 7.80 -2.39 -0.02 1.41 15 12 C -0.14 -5.06 5.54 30.59 0.17 -4.89 15 13 C -0.11 -2.87 5.92 30.59 0.18 -2.69 15 14 C -0.10 -2.45 5.50 30.60 0.17 -2.28 15 15 C 0.10 2.62 3.24 44.92 0.15 2.77 15 16 H 0.04 0.95 8.14 -2.39 -0.02 0.93 15 17 N -0.85 -17.75 9.25 -168.68 -1.56 -19.31 15 18 C -0.10 -3.55 5.12 30.60 0.16 -3.40 15 19 H 0.27 16.25 8.31 -92.71 -0.77 15.47 15 20 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 15 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 26 H 0.35 5.55 9.04 -89.69 -0.81 4.74 15 27 H 0.35 6.70 8.99 -89.70 -0.81 5.89 15 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 Total: -1.00 -68.95 240.40 1.61 -67.34 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -0.48 Total: 8.68 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 2.06 Total: -27.59 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.26 Total: -80.08 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.68 Total: -19.37 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.96 Total: 51.02 kcal Total: -68.95 1.61 -67.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086407775.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.501 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds