Wall clock time and date at job start Mon Mar 30 2020 20:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47557 * 270.00694 * 3 2 1 5 5 H 1.48504 * 109.46860 * 30.00577 * 3 2 1 6 6 H 1.48494 * 109.47252 * 150.00173 * 3 2 1 7 7 C 1.37876 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99970 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99830 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.46759 * 179.97438 * 9 7 2 11 11 C 1.47015 * 110.99590 * 170.36790 * 10 9 7 12 12 C 1.53155 * 109.44813 * 185.30200 * 11 10 9 13 13 O 1.45673 * 108.92520 * 302.75588 * 12 11 10 14 14 C 1.35532 * 115.23881 * 50.91840 * 13 12 11 15 15 O 1.20830 * 121.38381 * 131.57577 * 14 13 12 16 16 C 1.47199 * 111.00240 * 293.95520 * 10 9 7 17 17 H 0.96989 * 120.00350 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.46863 * 60.00107 * 9 7 2 19 19 H 1.08997 * 109.46804 * 299.99299 * 9 7 2 20 20 H 1.09000 * 109.47915 * 305.29479 * 11 10 9 21 21 H 1.08991 * 109.47483 * 65.30938 * 11 10 9 22 22 H 1.08997 * 109.56038 * 62.59323 * 12 11 10 23 23 H 1.08998 * 109.55907 * 182.91955 * 12 11 10 24 24 H 1.09002 * 109.63759 * 301.80747 * 16 10 9 25 25 H 1.08999 * 109.64011 * 62.21444 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 -0.0011 10 7 4.0014 -2.5789 -0.0010 11 6 5.4527 -2.6245 -0.2312 12 6 5.9036 -4.0828 -0.3561 13 8 5.5198 -4.8011 0.8518 14 6 4.2225 -4.6627 1.2188 15 8 3.5436 -5.6208 1.5037 16 6 3.6517 -3.2620 1.2551 17 1 -0.4850 0.8399 0.0004 18 1 3.8753 -0.6802 0.8889 19 1 3.8745 -0.6799 -0.8912 20 1 5.6918 -2.0902 -1.1507 21 1 5.9684 -2.1551 0.6064 22 1 5.4235 -4.5404 -1.2210 23 1 6.9864 -4.1210 -0.4750 24 1 4.0739 -2.7161 2.0988 25 1 2.5675 -3.3107 1.3561 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108282616.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:26:02 Heat of formation + Delta-G solvation = -71.635204 kcal Electronic energy + Delta-G solvation = -11393.122595 eV Core-core repulsion = 9179.226815 eV Total energy + Delta-G solvation = -2213.895780 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.17047 -37.26685 -35.88422 -32.61281 -30.16947 -28.64997 -25.62279 -23.24471 -21.18854 -19.64720 -17.28513 -16.79126 -16.47269 -15.40757 -15.12007 -14.58821 -14.22651 -13.53577 -13.01747 -12.57215 -12.37368 -11.88753 -11.57324 -11.42719 -10.91716 -10.61758 -10.45770 -10.06389 -9.57739 -9.40882 -8.68990 -7.82618 -6.16173 -4.16414 2.08205 3.19752 3.27154 3.28220 3.51689 4.27104 4.31177 4.60518 4.95355 5.14864 5.23762 5.31040 5.57629 5.79973 5.87521 6.13328 6.54626 6.66922 7.18651 7.29007 7.44302 7.67631 7.72818 8.46855 8.91141 9.42980 10.96525 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.061039 B = 0.011670 C = 0.010248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.616410 B = 2398.726267 C = 2731.551746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.162 3.838 10 N -0.521 5.521 11 C 0.004 3.996 12 C 0.082 3.918 13 O -0.389 6.389 14 C 0.497 3.503 15 O -0.459 6.459 16 C 0.018 3.982 17 H 0.266 0.734 18 H -0.004 1.004 19 H 0.033 0.967 20 H 0.097 0.903 21 H 0.044 0.956 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.657 -2.420 -0.185 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.037 3.963 10 N -0.248 5.248 11 C -0.125 4.125 12 C 0.008 3.992 13 O -0.310 6.310 14 C 0.337 3.663 15 O -0.339 6.339 16 C -0.111 4.111 17 H 0.076 0.924 18 H 0.014 0.986 19 H 0.051 0.949 20 H 0.115 0.885 21 H 0.062 0.938 22 H 0.096 0.904 23 H 0.126 0.874 24 H 0.087 0.913 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.048 -3.133 -0.336 11.488 hybrid contribution 0.728 1.614 0.537 1.851 sum 11.776 -1.519 0.201 11.876 Atomic orbital electron populations 1.69883 1.06156 1.27091 1.50088 1.24897 0.94761 0.98894 0.94551 0.86859 0.80226 0.83956 0.78677 1.20005 1.21024 1.19287 1.20987 0.88369 0.95032 1.51510 0.89926 1.20281 0.97562 0.82636 0.95858 1.62472 1.09996 1.20651 1.31668 1.22894 0.90708 0.96160 1.02749 1.23416 1.00777 0.90827 0.84161 1.86700 1.28009 1.72215 1.44029 1.23644 0.79131 0.91172 0.72363 1.90600 1.55588 1.44627 1.43059 1.22895 1.04821 0.90080 0.93267 0.92422 0.98644 0.94910 0.88523 0.93805 0.90387 0.87363 0.91299 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.96 55.43 0.77 -25.86 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 20.41 27.47 -169.99 -4.67 15.75 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 15 7 C -0.52 -14.15 9.10 -34.44 -0.31 -14.46 15 8 H 0.08 2.47 7.35 -52.49 -0.39 2.08 15 9 C 0.16 3.64 3.79 -4.97 -0.02 3.62 15 10 N -0.52 -10.15 4.73 -236.69 -1.12 -11.27 15 11 C 0.00 0.05 5.60 -3.68 -0.02 0.03 15 12 C 0.08 1.05 7.25 37.24 0.27 1.32 15 13 O -0.39 -6.41 10.67 -42.82 -0.46 -6.87 15 14 C 0.50 9.30 7.77 36.30 0.28 9.58 15 15 O -0.46 -9.80 17.95 -18.59 -0.33 -10.13 15 16 C 0.02 0.35 5.49 -4.52 -0.02 0.32 15 17 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 18 H 0.00 -0.09 7.17 -51.93 -0.37 -0.46 15 19 H 0.03 0.72 7.43 -51.93 -0.39 0.33 15 20 H 0.10 1.24 8.03 -51.93 -0.42 0.83 15 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.08 0.98 8.14 -51.93 -0.42 0.55 15 23 H 0.11 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.07 1.21 8.13 -51.93 -0.42 0.78 15 25 H 0.13 2.69 6.94 -51.93 -0.36 2.33 15 LS Contribution 217.81 15.07 3.28 3.28 Total: -1.00 -31.02 217.81 -5.22 -36.25 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -2.78 Total: -3.45 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 0.08 Total: 2.30 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.34 Total: -37.13 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.79 Total: -17.00 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -31.02 -5.22 -36.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108282616.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.387 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds