Wall clock time and date at job start Mon Mar 30 2020 20:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.32910 * 2 1 4 4 C 1.54913 * 110.37063 * 237.76629 * 2 1 3 5 5 C 1.55153 * 101.58540 * 204.14749 * 4 2 1 6 6 C 1.54327 * 102.93983 * 35.50377 * 5 4 2 7 7 H 1.09003 * 109.88571 * 97.37944 * 6 5 4 8 8 C 1.52998 * 109.88158 * 218.38832 * 6 5 4 9 9 O 1.42905 * 109.47396 * 53.54460 * 8 6 5 10 10 N 1.47186 * 107.29438 * 337.71021 * 6 5 4 11 11 C 1.36933 * 125.73739 * 179.03238 * 10 6 5 12 12 H 1.08004 * 120.00086 * 161.59832 * 11 10 6 13 13 C 1.38814 * 120.00309 * 341.60983 * 11 10 6 14 14 N 1.31618 * 119.99558 * 350.42791 * 13 11 10 15 15 Si 1.86799 * 120.00329 * 170.43262 * 13 11 10 16 16 H 1.48491 * 109.47133 * 89.99506 * 15 13 11 17 17 H 1.48505 * 109.46994 * 210.00005 * 15 13 11 18 18 H 1.48506 * 109.46834 * 329.99649 * 15 13 11 19 19 H 1.09007 * 109.46922 * 187.91101 * 1 2 3 20 20 H 1.09002 * 109.46877 * 67.91364 * 1 2 3 21 21 H 1.08991 * 109.47379 * 307.90822 * 1 2 3 22 22 H 1.08996 * 111.00214 * 322.22757 * 4 2 1 23 23 H 1.09000 * 111.00419 * 86.03757 * 4 2 1 24 24 H 1.09003 * 110.71883 * 153.86083 * 5 4 2 25 25 H 1.08998 * 110.72534 * 276.96734 * 5 4 2 26 26 H 1.09000 * 109.47205 * 173.54558 * 8 6 5 27 27 H 1.09001 * 109.47410 * 293.54346 * 8 6 5 28 28 H 0.96698 * 114.00256 * 179.97438 * 9 8 6 29 29 H 0.97005 * 119.99811 * 175.92045 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0692 -0.7746 -1.2284 5 6 3.4778 -1.1988 -0.7355 6 6 3.2494 -1.4776 0.7651 7 1 3.1042 -2.5459 0.9259 8 6 4.4525 -0.9887 1.5741 9 8 4.7127 0.3810 1.2605 10 7 2.0431 -0.7372 1.1690 11 6 1.4884 -0.7340 2.4209 12 1 0.7993 0.0479 2.7043 13 6 1.8118 -1.7356 3.3260 14 7 2.4975 -2.7861 2.9277 15 14 1.2739 -1.5926 5.1091 16 1 -0.0628 -2.2177 5.2745 17 1 2.2564 -2.2870 5.9798 18 1 1.2007 -0.1592 5.4906 19 1 -0.3633 -1.0180 0.1415 20 1 -0.3633 0.3864 -0.9523 21 1 -0.3634 0.6313 0.8107 22 1 1.4511 -1.6465 -1.4426 23 1 2.1393 -0.1243 -2.1004 24 1 3.8106 -2.1010 -1.2490 25 1 4.1952 -0.3902 -0.8754 26 1 4.2372 -1.0832 2.6385 27 1 5.3265 -1.5907 1.3254 28 1 5.4639 0.7581 1.7385 29 1 2.7746 -3.4569 3.5713 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307233473.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:21:52 Heat of formation + Delta-G solvation = -54.131025 kcal Electronic energy + Delta-G solvation = -12215.688784 eV Core-core repulsion = 10138.385136 eV Total energy + Delta-G solvation = -2077.303647 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.68882 -36.90336 -34.53098 -32.35010 -30.97950 -28.11760 -26.01691 -24.30107 -21.29198 -21.00112 -18.47972 -17.87046 -16.88514 -16.23189 -15.63410 -15.16719 -14.58365 -14.34922 -13.75131 -13.34752 -13.17927 -12.79504 -12.76507 -12.62472 -12.34756 -12.01290 -11.66006 -11.39931 -11.27523 -11.06465 -10.82986 -10.40457 -8.68284 -7.68570 -5.17293 1.45747 1.46778 1.55270 2.54140 3.38265 3.63412 3.81528 4.16112 4.23926 4.32901 4.61197 4.71615 4.75664 4.82349 4.94046 5.01871 5.09599 5.21512 5.29884 5.41398 5.54400 5.68470 5.74741 5.95205 6.35299 7.09941 7.21213 7.87793 8.58940 9.30647 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.039010 B = 0.018234 C = 0.014731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.592568 B = 1535.229625 C = 1900.357455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.142 3.858 3 H 0.022 0.978 4 C -0.117 4.117 5 C -0.126 4.126 6 C 0.171 3.829 7 H 0.062 0.938 8 C 0.089 3.911 9 O -0.578 6.578 10 N -0.599 5.599 11 C -0.219 4.219 12 H 0.065 0.935 13 C -0.058 4.058 14 N -0.936 5.936 15 Si 0.960 3.040 16 H -0.288 1.288 17 H -0.293 1.293 18 H -0.278 1.278 19 H 0.037 0.963 20 H 0.075 0.925 21 H 0.037 0.963 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.375 0.625 29 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 3.673 -5.611 6.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.037 3.963 3 H 0.040 0.960 4 C -0.155 4.155 5 C -0.164 4.164 6 C 0.065 3.935 7 H 0.080 0.920 8 C 0.010 3.990 9 O -0.384 6.384 10 N -0.323 5.323 11 C -0.349 4.349 12 H 0.083 0.917 13 C -0.251 4.251 14 N -0.585 5.585 15 Si 0.790 3.210 16 H -0.215 1.215 17 H -0.220 1.220 18 H -0.204 1.204 19 H 0.056 0.944 20 H 0.094 0.906 21 H 0.056 0.944 22 H 0.080 0.920 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.222 0.778 29 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.391 3.445 -5.839 6.921 hybrid contribution 0.376 -0.111 1.784 1.826 sum 1.767 3.334 -4.056 5.540 Atomic orbital electron populations 1.21842 0.95943 1.00571 1.00851 1.21445 0.93366 0.94053 0.87445 0.96047 1.22708 0.95942 0.99827 0.97028 1.22601 0.97582 1.01091 0.95149 1.21135 0.84765 0.96419 0.91189 0.92003 1.22486 0.96872 0.80789 0.98833 1.86467 1.54839 1.27359 1.69702 1.44715 1.26947 1.54494 1.06145 1.19126 1.21922 1.04596 0.89266 0.91719 1.25452 1.02403 0.95482 1.01804 1.70091 1.44337 1.11259 1.32845 0.85365 0.77235 0.77181 0.81259 1.21510 1.21978 1.20394 0.94377 0.90610 0.94421 0.91964 0.89261 0.90947 0.91091 0.95941 0.95086 0.77807 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.78 71.98 0.63 -4.53 15 2 C 0.14 6.13 3.83 45.47 0.17 6.30 15 3 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 4 C -0.12 -4.22 6.50 31.99 0.21 -4.01 15 5 C -0.13 -4.88 6.36 31.78 0.20 -4.68 15 6 C 0.17 8.30 2.52 45.31 0.11 8.42 15 7 H 0.06 3.44 6.34 -2.39 -0.02 3.43 15 8 C 0.09 4.11 6.43 71.98 0.46 4.58 15 9 O -0.58 -23.94 12.44 -148.98 -1.85 -25.80 15 10 N -0.60 -30.95 2.98 -644.42 -1.92 -32.87 15 11 C -0.22 -12.32 9.06 84.03 0.76 -11.56 15 12 H 0.07 3.62 7.51 -2.91 -0.02 3.60 15 13 C -0.06 -3.25 4.58 84.86 0.39 -2.86 15 14 N -0.94 -54.55 9.85 21.65 0.21 -54.33 15 15 Si 0.96 45.99 29.57 68.60 2.03 48.02 15 16 H -0.29 -13.64 7.11 99.48 0.71 -12.93 15 17 H -0.29 -14.02 7.11 99.48 0.71 -13.31 15 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 19 H 0.04 1.58 8.14 -2.38 -0.02 1.56 15 20 H 0.08 2.31 8.14 -2.39 -0.02 2.30 15 21 H 0.04 1.48 7.79 -2.39 -0.02 1.46 15 22 H 0.06 2.24 8.06 -2.39 -0.02 2.22 15 23 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 24 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.07 2.68 6.99 -2.39 -0.02 2.66 15 26 H 0.02 1.18 6.43 -2.39 -0.02 1.17 15 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 15 28 H 0.38 11.64 9.12 -74.06 -0.68 10.97 15 29 H 0.24 13.93 8.32 -92.70 -0.77 13.16 15 Total: -1.00 -63.93 233.63 1.86 -62.07 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.45 Total: 11.27 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 2.94 Total: -8.36 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -1.70 Total: -87.20 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.85 Total: -25.80 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -63.93 1.86 -62.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307233473.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.937 kcal (2) G-P(sol) polarization free energy of solvation -63.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds