Wall clock time and date at job start Mon Mar 30 2020 20:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 110.27236 * 2 1 4 4 O 1.42892 * 109.47191 * 299.36280 * 3 2 1 5 5 C 1.34925 * 117.00152 * 180.02562 * 4 3 2 6 6 H 1.08007 * 119.99962 * 359.97438 * 5 4 3 7 7 C 1.38638 * 120.00576 * 180.02562 * 5 4 3 8 8 N 1.31578 * 120.00373 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99511 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47288 * 90.00167 * 9 7 5 11 11 H 1.48502 * 109.46808 * 210.00177 * 9 7 5 12 12 H 1.48506 * 109.47162 * 329.99669 * 9 7 5 13 13 C 1.55035 * 110.36031 * 122.10845 * 2 1 3 14 14 C 1.54937 * 102.71769 * 97.04975 * 13 2 1 15 15 N 1.48531 * 103.37331 * 37.39814 * 14 13 2 16 16 C 1.47900 * 105.82345 * 320.71279 * 15 14 13 17 17 H 1.08997 * 109.46978 * 180.63312 * 1 2 3 18 18 H 1.08994 * 109.47210 * 300.63542 * 1 2 3 19 19 H 1.09003 * 109.46894 * 60.64018 * 1 2 3 20 20 H 1.09000 * 109.46746 * 59.36307 * 3 2 1 21 21 H 1.08995 * 109.47025 * 179.36070 * 3 2 1 22 22 H 0.96996 * 119.99714 * 179.97438 * 8 7 5 23 23 H 1.09004 * 110.90974 * 338.71822 * 13 2 1 24 24 H 1.09005 * 110.74113 * 215.30127 * 13 2 1 25 25 H 1.09002 * 110.66811 * 278.88221 * 14 13 2 26 26 H 1.09001 * 110.66542 * 155.91860 * 14 13 2 27 27 H 1.00906 * 110.99799 * 81.23042 * 15 14 13 28 28 H 1.08995 * 109.91579 * 144.68250 * 16 15 14 29 29 H 1.08999 * 109.91460 * 265.77773 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 8 1.6055 2.1110 -1.1741 5 6 1.9881 3.3956 -1.3285 6 1 2.6100 3.8673 -0.5820 7 6 1.5821 4.1106 -2.4447 8 7 1.9548 5.3635 -2.5950 9 14 0.5058 3.2950 -3.7355 10 1 -0.9236 3.5017 -3.3906 11 1 0.7861 3.8951 -5.0646 12 1 0.7996 1.8399 -3.7775 13 6 2.0694 -0.7726 1.2312 14 6 2.3620 -2.1787 0.6501 15 7 2.8829 -1.8869 -0.7099 16 6 2.0645 -0.7671 -1.2235 17 1 -0.3633 -1.0276 0.0114 18 1 -0.3633 0.5236 0.8842 19 1 -0.3633 0.5039 -0.8957 20 1 1.6947 1.9575 0.8842 21 1 3.1499 1.4200 0.0115 22 1 1.6709 5.8635 -3.3761 23 1 1.3152 -0.8288 2.0162 24 1 2.9837 -0.3121 1.6057 25 1 1.4476 -2.7694 0.5933 26 1 3.1142 -2.6932 1.2481 27 1 3.8596 -1.6356 -0.6767 28 1 2.6799 -0.1077 -1.8355 29 1 1.2345 -1.1544 -1.8144 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307349763.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:06 Heat of formation + Delta-G solvation = -65.485612 kcal Electronic energy + Delta-G solvation = -11752.037393 eV Core-core repulsion = 9674.241374 eV Total energy + Delta-G solvation = -2077.796019 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.39025 -38.02951 -34.28924 -33.15186 -30.05260 -28.11459 -26.52336 -25.12168 -22.60576 -20.21038 -19.59890 -17.52753 -17.41619 -16.35653 -15.82976 -15.36703 -14.97227 -14.76887 -14.28587 -13.72237 -13.54113 -13.20924 -13.00586 -12.77990 -12.27815 -12.06526 -11.92239 -11.68047 -11.55241 -11.44585 -11.29305 -10.39744 -9.57244 -8.30320 -6.00471 1.36342 1.39520 1.58580 2.41435 3.02490 3.20143 3.37567 3.67464 3.92311 4.10608 4.30863 4.37373 4.49329 4.64178 4.72745 4.78057 4.80345 4.95715 5.00790 5.07602 5.22719 5.30876 5.41225 5.54213 5.80024 6.11437 6.42969 7.09054 7.78613 8.85877 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.060700 B = 0.011491 C = 0.010992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.173285 B = 2436.063850 C = 2546.751454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C 0.092 3.908 4 O -0.338 6.338 5 C -0.360 4.360 6 H 0.045 0.955 7 C -0.013 4.013 8 N -0.954 5.954 9 Si 0.974 3.026 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.260 1.260 13 C -0.139 4.139 14 C 0.048 3.952 15 N -0.680 5.680 16 C 0.058 3.942 17 H 0.075 0.925 18 H 0.056 0.944 19 H 0.039 0.961 20 H 0.026 0.974 21 H 0.022 0.978 22 H 0.274 0.726 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.340 0.660 28 H 0.047 0.953 29 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -14.879 6.007 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C 0.015 3.985 4 O -0.254 6.254 5 C -0.439 4.439 6 H 0.062 0.938 7 C -0.206 4.206 8 N -0.601 5.601 9 Si 0.798 3.202 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.184 1.184 13 C -0.178 4.178 14 C -0.081 4.081 15 N -0.307 5.307 16 C -0.072 4.072 17 H 0.094 0.906 18 H 0.075 0.925 19 H 0.058 0.942 20 H 0.044 0.956 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.156 0.844 28 H 0.066 0.934 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.802 -15.438 5.407 16.456 hybrid contribution 0.294 1.477 0.171 1.516 sum -1.508 -13.961 5.578 15.109 Atomic orbital electron populations 1.21695 0.93136 1.01933 1.01527 1.21957 0.97443 0.92509 0.97058 1.22364 0.96069 0.92387 0.87705 1.85159 1.74197 1.24247 1.41759 1.20344 1.29894 0.86515 1.07105 0.93765 1.25194 0.99909 0.95538 0.99924 1.69796 1.49174 1.09926 1.31239 0.85138 0.78582 0.79200 0.77299 1.19754 1.20567 1.18418 1.23216 1.01755 0.96440 0.96381 1.23167 1.01635 0.95279 0.88018 1.62762 1.07223 1.37974 1.22714 1.22648 0.97668 0.90770 0.96126 0.90642 0.92454 0.94227 0.95625 0.95988 0.91654 0.88929 0.91341 0.89589 0.88485 0.84412 0.93384 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.08 71.98 0.58 -3.27 15 2 C -0.09 -2.83 0.77 -51.15 -0.04 -2.87 15 3 C 0.09 3.85 4.63 71.98 0.33 4.18 15 4 O -0.34 -17.79 7.54 -81.94 -0.62 -18.41 15 5 C -0.36 -21.91 10.35 67.92 0.70 -21.20 15 6 H 0.04 2.89 8.00 -2.91 -0.02 2.87 15 7 C -0.01 -0.76 5.49 84.83 0.47 -0.30 15 8 N -0.95 -60.72 13.96 21.61 0.30 -60.42 15 9 Si 0.97 48.30 28.62 68.60 1.96 50.26 15 10 H -0.27 -12.99 7.11 99.48 0.71 -12.28 15 11 H -0.28 -13.25 7.11 99.48 0.71 -12.55 15 12 H -0.26 -12.64 7.11 99.48 0.71 -11.94 15 13 C -0.14 -3.27 6.19 31.95 0.20 -3.08 15 14 C 0.05 0.99 7.54 86.65 0.65 1.64 15 15 N -0.68 -17.78 7.51 -502.22 -3.77 -21.56 15 16 C 0.06 1.89 6.64 86.44 0.57 2.47 15 17 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 18 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 19 H 0.04 1.42 7.77 -2.39 -0.02 1.40 15 20 H 0.03 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.27 16.20 8.31 -92.71 -0.77 15.43 15 23 H 0.09 1.87 7.87 -2.38 -0.02 1.85 15 24 H 0.07 1.61 7.87 -2.38 -0.02 1.60 15 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 15 27 H 0.34 8.25 8.92 -89.69 -0.80 7.45 15 28 H 0.05 1.84 7.45 -2.39 -0.02 1.82 15 29 H 0.07 2.36 7.69 -2.39 -0.02 2.34 15 Total: -1.00 -67.60 241.37 1.66 -65.94 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.32 Total: 6.61 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.47 Total: -22.43 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -3.47 Total: -81.98 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.62 Total: -18.41 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.96 Total: 50.26 kcal Total: -67.60 1.66 -65.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307349763.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.454 kcal (2) G-P(sol) polarization free energy of solvation -67.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds