Wall clock time and date at job start Mon Mar 30 2020 20:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.48266 * 2 1 4 4 C 1.53088 * 109.48306 * 120.03156 * 2 1 3 5 5 C 1.53173 * 109.16640 * 177.58904 * 4 2 1 6 6 C 1.53183 * 109.03574 * 303.01884 * 5 4 2 7 7 H 1.09001 * 109.52019 * 297.01443 * 6 5 4 8 8 N 1.46498 * 109.52304 * 176.88255 * 6 5 4 9 9 C 1.36943 * 119.99752 * 154.84749 * 8 6 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 6 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 6 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 C 1.53089 * 109.21458 * 56.94800 * 6 5 4 18 18 O 1.42912 * 109.47589 * 239.97274 * 2 1 3 19 19 H 1.09003 * 109.46307 * 299.97187 * 1 2 3 20 20 H 1.08997 * 109.47286 * 59.96760 * 1 2 3 21 21 H 1.08992 * 109.46953 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.52353 * 57.68039 * 4 2 1 23 23 H 1.08999 * 109.57112 * 297.52778 * 4 2 1 24 24 H 1.08993 * 109.54702 * 183.15325 * 5 4 2 25 25 H 1.08997 * 109.61549 * 62.92558 * 5 4 2 26 26 H 0.97001 * 120.00384 * 335.13105 * 8 6 5 27 27 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.48165 * 62.40566 * 17 6 5 29 29 H 1.08999 * 109.48185 * 182.44172 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5711 -0.7710 1.2120 6 6 4.0176 -1.4602 -0.0811 7 1 3.6621 -2.4906 -0.0861 8 7 5.4802 -1.4463 -0.1634 9 6 6.1335 -2.3979 -0.9003 10 1 5.5702 -3.1559 -1.4243 11 6 7.5197 -2.3883 -0.9736 12 7 8.1475 -3.3025 -1.6822 13 14 8.4938 -1.0777 -0.0666 14 1 8.8174 -1.5588 1.3006 15 1 9.7523 -0.7976 -0.8035 16 1 7.6864 0.1653 0.0242 17 6 3.4307 -0.7108 -1.2800 18 8 2.0065 -0.6742 -1.1665 19 1 -0.3632 0.5134 0.8903 20 1 -0.3634 0.5143 -0.8897 21 1 -0.3633 -1.0276 -0.0005 22 1 1.6443 -1.7375 1.2709 23 1 1.7149 -0.1853 2.1403 24 1 3.9392 -1.3328 2.0704 25 1 3.9703 0.2429 1.2414 26 1 5.9861 -0.7656 0.3074 27 1 9.1162 -3.2956 -1.7338 28 1 3.8192 0.3075 -1.2979 29 1 3.7099 -1.2227 -2.2009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402382290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:34 Heat of formation + Delta-G solvation = -68.218657 kcal Electronic energy + Delta-G solvation = -11636.185591 eV Core-core repulsion = 9558.271059 eV Total energy + Delta-G solvation = -2077.914533 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.42421 -36.84998 -34.34840 -33.77731 -31.62290 -28.20571 -25.84255 -24.29184 -22.62861 -21.42107 -19.62927 -17.23621 -17.14894 -16.48763 -15.74719 -15.60467 -14.98074 -14.71925 -14.39805 -13.48861 -13.32901 -13.15240 -13.00932 -12.95545 -12.30815 -12.19578 -12.02308 -11.86379 -11.56562 -11.23122 -11.12869 -10.42134 -9.32564 -8.05030 -5.40646 1.36884 1.41000 1.48262 2.46665 2.84423 3.25669 3.59014 3.86594 3.90240 4.15873 4.21307 4.29609 4.42964 4.60774 4.78482 4.84681 4.88740 4.91138 5.06907 5.11724 5.30206 5.37079 5.40789 5.72665 6.16325 6.38342 7.03797 7.77508 7.98842 9.16433 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.075628 B = 0.010092 C = 0.009533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.146035 B = 2773.673941 C = 2936.543019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.062 0.938 4 C -0.137 4.137 5 C -0.126 4.126 6 C 0.145 3.855 7 H 0.040 0.960 8 N -0.745 5.745 9 C -0.239 4.239 10 H 0.053 0.947 11 C -0.061 4.061 12 N -0.983 5.983 13 Si 0.959 3.041 14 H -0.276 1.276 15 H -0.295 1.295 16 H -0.251 1.251 17 C 0.056 3.944 18 O -0.402 6.402 19 H 0.096 0.904 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.368 0.632 27 H 0.259 0.741 28 H 0.048 0.952 29 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.135 9.804 7.503 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.014 3.986 3 H 0.080 0.920 4 C -0.175 4.175 5 C -0.164 4.164 6 C 0.037 3.963 7 H 0.059 0.941 8 N -0.390 5.390 9 C -0.370 4.370 10 H 0.072 0.928 11 C -0.253 4.253 12 N -0.633 5.633 13 Si 0.786 3.214 14 H -0.202 1.202 15 H -0.221 1.221 16 H -0.175 1.175 17 C -0.023 4.023 18 O -0.321 6.321 19 H 0.114 0.886 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.121 0.879 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.202 0.798 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.259 9.536 7.232 17.862 hybrid contribution 1.341 0.266 0.144 1.374 sum -11.918 9.802 7.376 17.103 Atomic orbital electron populations 1.21767 0.91391 1.02973 1.03417 1.22404 0.96305 0.95115 0.84777 0.92042 1.22179 0.94006 1.02081 0.99215 1.21869 0.96830 1.00933 0.96737 1.20970 0.82654 0.97868 0.94832 0.94135 1.42662 1.02236 1.34120 1.60000 1.19036 0.90217 1.05587 1.22163 0.92850 1.25541 0.97373 1.01064 1.01327 1.69891 1.08277 1.38400 1.46751 0.85359 0.78029 0.79874 0.78182 1.20203 1.22147 1.17501 1.23105 0.79951 0.99542 0.99698 1.87867 1.21097 1.78639 1.44465 0.88577 0.92058 0.92286 0.91509 0.87948 0.91128 0.91126 0.79815 0.93201 0.93358 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.56 71.98 0.69 -1.92 15 2 C 0.07 1.78 3.27 30.62 0.10 1.88 15 3 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 4 C -0.14 -3.23 5.42 30.68 0.17 -3.06 15 5 C -0.13 -3.73 5.50 30.71 0.17 -3.56 15 6 C 0.15 5.75 2.97 45.08 0.13 5.88 15 7 H 0.04 1.77 8.08 -2.39 -0.02 1.75 15 8 N -0.75 -35.27 4.93 -322.50 -1.59 -36.86 15 9 C -0.24 -13.88 10.42 84.03 0.88 -13.00 15 10 H 0.05 3.43 8.06 -2.91 -0.02 3.40 15 11 C -0.06 -3.65 5.50 84.86 0.47 -3.18 15 12 N -0.98 -63.61 13.97 21.65 0.30 -63.31 15 13 Si 0.96 45.35 27.74 68.60 1.90 47.25 15 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 15 H -0.29 -14.10 7.11 99.48 0.71 -13.40 15 16 H -0.25 -10.61 6.52 99.48 0.65 -9.96 15 17 C 0.06 2.13 6.44 72.01 0.46 2.59 15 18 O -0.40 -13.64 10.40 -148.98 -1.55 -15.19 15 19 H 0.10 1.26 8.14 -2.39 -0.02 1.24 15 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.07 1.65 8.14 -2.38 -0.02 1.63 15 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 15 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 26 H 0.37 16.40 5.66 -92.71 -0.52 15.87 15 27 H 0.26 15.90 8.31 -92.70 -0.77 15.13 15 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 29 H 0.07 2.91 8.14 -2.39 -0.02 2.89 15 Total: -1.00 -67.44 238.37 2.66 -64.79 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.53 Total: 17.70 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.06 Total: -14.38 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -1.29 Total: -100.17 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.55 Total: -15.19 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -67.44 2.66 -64.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402382290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.433 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds