Wall clock time and date at job start Mon Mar 30 2020 20:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.32968 * 2 1 4 4 O 1.44415 * 110.47007 * 237.68349 * 2 1 3 5 5 C 1.44642 * 105.37338 * 200.68918 * 4 2 1 6 6 C 1.54477 * 104.69773 * 40.34325 * 5 4 2 7 7 H 1.09002 * 110.51371 * 217.47805 * 6 5 4 8 8 N 1.46504 * 110.50983 * 94.90362 * 6 5 4 9 9 C 1.36937 * 119.99464 * 88.30858 * 8 6 5 10 10 H 1.07996 * 120.00607 * 0.02562 * 9 8 6 11 11 C 1.38819 * 119.99846 * 180.02562 * 9 8 6 12 12 N 1.31618 * 119.99628 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00243 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47230 * 120.00010 * 13 11 9 16 16 H 1.48498 * 109.47021 * 239.99887 * 13 11 9 17 17 C 1.54478 * 110.37284 * 122.24573 * 2 1 3 18 18 H 1.08999 * 110.51553 * 261.56593 * 17 2 1 19 19 C 1.53005 * 110.51234 * 24.27971 * 17 2 1 20 20 H 1.09001 * 109.47200 * 297.74985 * 1 2 3 21 21 H 1.08998 * 109.46966 * 57.75148 * 1 2 3 22 22 H 1.08999 * 109.46746 * 177.75347 * 1 2 3 23 23 H 1.09006 * 110.33613 * 281.58701 * 5 4 2 24 24 H 1.09000 * 110.51087 * 159.18466 * 5 4 2 25 25 H 0.96993 * 120.00212 * 268.30851 * 8 6 5 26 26 H 0.97001 * 120.00266 * 180.02562 * 12 11 9 27 27 H 1.08998 * 109.47302 * 174.64173 * 19 17 2 28 28 H 1.09002 * 109.46826 * 294.64162 * 19 17 2 29 29 H 1.08994 * 109.47071 * 54.63916 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7233 -1.1434 5 6 3.3915 -1.0878 -0.7980 6 6 3.3194 -1.5026 0.6883 7 1 4.2115 -1.1726 1.2207 8 7 3.1586 -2.9538 0.8090 9 6 4.2619 -3.7637 0.8517 10 1 5.2507 -3.3327 0.7968 11 6 4.1096 -5.1388 0.9655 12 7 2.9046 -5.6640 1.0330 13 14 5.6146 -6.2436 1.0245 14 1 6.8422 -5.4130 0.9324 15 1 5.6232 -7.0006 2.3019 16 1 5.5748 -7.1953 -0.1147 17 6 2.0678 -0.7727 1.2248 18 1 2.3411 -0.0818 2.0224 19 6 1.0298 -1.7818 1.7201 20 1 -0.3633 0.4785 0.9095 21 1 -0.3633 0.5483 -0.8691 22 1 -0.3633 -1.0269 -0.0403 23 1 4.0566 -0.2331 -0.9217 24 1 3.7296 -1.9244 -1.4094 25 1 2.2706 -3.3408 0.8587 26 1 2.7980 -6.6248 1.1129 27 1 1.4603 -2.3821 2.5216 28 1 0.1553 -1.2495 2.0943 29 1 0.7344 -2.4327 0.8973 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405589770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:37 Heat of formation + Delta-G solvation = -56.099430 kcal Electronic energy + Delta-G solvation = -11888.572171 eV Core-core repulsion = 9811.183168 eV Total energy + Delta-G solvation = -2077.389004 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73956 -36.30745 -34.40879 -33.13441 -30.22246 -28.46689 -25.86696 -25.67759 -22.04662 -20.35314 -19.42518 -17.48863 -16.99769 -16.30370 -15.96331 -15.53131 -14.69556 -14.44936 -14.04035 -13.29670 -13.24919 -12.92876 -12.83805 -12.69877 -12.22902 -12.18075 -11.98835 -11.75064 -11.44732 -11.35060 -11.02733 -10.52765 -8.99024 -7.95371 -5.23753 1.46897 1.47865 1.57856 2.55387 3.08408 3.38949 3.77330 3.83581 4.03850 4.17151 4.33601 4.53020 4.60389 4.68318 4.72803 4.82273 4.91469 4.99938 5.07888 5.23105 5.28945 5.36065 5.48394 5.51494 6.09337 6.27333 7.33666 8.10479 8.34192 9.28604 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.067732 B = 0.011265 C = 0.010520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.296976 B = 2485.011764 C = 2660.970569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.086 0.914 4 O -0.400 6.400 5 C 0.027 3.973 6 C 0.135 3.865 7 H 0.066 0.934 8 N -0.730 5.730 9 C -0.245 4.245 10 H 0.078 0.922 11 C -0.076 4.076 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.264 1.264 15 H -0.293 1.293 16 H -0.296 1.296 17 C -0.124 4.124 18 H 0.104 0.896 19 C -0.125 4.125 20 H 0.094 0.906 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.380 0.620 26 H 0.251 0.749 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 12.015 0.399 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.104 0.896 4 O -0.320 6.320 5 C -0.052 4.052 6 C 0.025 3.975 7 H 0.084 0.916 8 N -0.373 5.373 9 C -0.377 4.377 10 H 0.096 0.904 11 C -0.269 4.269 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.189 1.189 15 H -0.220 1.220 16 H -0.223 1.223 17 C -0.144 4.144 18 H 0.122 0.878 19 C -0.182 4.182 20 H 0.112 0.888 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.216 0.784 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.082 11.914 0.217 12.097 hybrid contribution 0.601 -1.204 0.050 1.346 sum -1.481 10.710 0.267 10.816 Atomic orbital electron populations 1.21880 0.92417 1.02478 1.03304 1.23198 0.96183 0.95195 0.84190 0.89601 1.89080 1.28206 1.75265 1.39408 1.24217 0.83732 0.98850 0.98424 1.21871 0.97275 0.84576 0.93752 0.91624 1.42893 1.06068 1.01011 1.87304 1.19756 0.88318 0.89028 1.40610 0.90420 1.25583 0.99255 0.98311 1.03709 1.69838 1.22197 1.10896 1.59157 0.85052 0.79271 0.78727 0.76568 1.18872 1.22024 1.22295 1.22783 0.95280 0.97666 0.98630 0.87781 1.21563 0.98519 0.98293 0.99825 0.88767 0.91695 0.93108 0.90914 0.91712 0.78416 0.94050 0.94268 0.90106 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 8.42 71.98 0.61 -2.97 15 2 C 0.07 2.05 3.84 31.10 0.12 2.17 15 3 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 4 O -0.40 -15.24 11.35 -148.98 -1.69 -16.93 15 5 C 0.03 1.04 7.37 72.48 0.53 1.57 15 6 C 0.14 5.44 3.74 46.01 0.17 5.61 15 7 H 0.07 2.55 8.10 -2.39 -0.02 2.53 15 8 N -0.73 -37.62 4.65 -318.13 -1.48 -39.09 15 9 C -0.25 -13.77 9.97 84.04 0.84 -12.93 15 10 H 0.08 4.14 7.83 -2.91 -0.02 4.12 15 11 C -0.08 -4.44 5.50 84.86 0.47 -3.98 15 12 N -0.97 -60.39 13.06 21.65 0.28 -60.10 15 13 Si 0.97 46.58 29.55 68.60 2.03 48.61 15 14 H -0.26 -11.79 7.11 99.48 0.71 -11.08 15 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 15 16 H -0.30 -14.21 7.11 99.48 0.71 -13.50 15 17 C -0.12 -4.02 3.63 -9.78 -0.04 -4.06 15 18 H 0.10 2.77 8.14 -2.39 -0.02 2.75 15 19 C -0.12 -4.35 6.58 71.98 0.47 -3.88 15 20 H 0.09 1.79 7.78 -2.39 -0.02 1.77 15 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.05 1.46 6.58 -2.39 -0.02 1.44 15 23 H 0.07 2.29 8.14 -2.38 -0.02 2.27 15 24 H 0.06 2.84 8.06 -2.39 -0.02 2.82 15 25 H 0.38 21.02 5.08 -92.71 -0.47 20.55 15 26 H 0.25 15.08 8.31 -92.71 -0.77 14.31 15 27 H 0.04 1.55 7.75 -2.39 -0.02 1.54 15 28 H 0.08 2.19 7.05 -2.39 -0.02 2.18 15 29 H 0.03 1.39 6.34 -2.39 -0.02 1.38 15 Total: -1.00 -65.62 234.43 2.97 -62.65 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.65 Total: 23.32 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 3.17 Total: -18.46 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -1.20 Total: -99.20 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -1.69 Total: -16.93 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -65.62 2.97 -62.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405589770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.553 kcal (2) G-P(sol) polarization free energy of solvation -65.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds