Wall clock time and date at job start Mon Mar 30 2020 20:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08999 * 110.27425 * 55.64061 * 3 2 1 5 5 C 1.54949 * 110.30860 * 177.83399 * 3 2 1 6 6 C 1.55302 * 100.94413 * 155.36139 * 5 3 2 7 7 H 1.09001 * 110.84889 * 84.05891 * 6 5 3 8 8 N 1.46504 * 111.02137 * 207.59416 * 6 5 3 9 9 C 1.36930 * 120.00047 * 199.38349 * 8 6 5 10 10 H 1.08003 * 120.00412 * 0.02562 * 9 8 6 11 11 C 1.38810 * 119.99894 * 180.02562 * 9 8 6 12 12 N 1.31615 * 120.00181 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99906 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47216 * 89.99959 * 13 11 9 15 15 H 1.48505 * 109.47335 * 210.00131 * 13 11 9 16 16 H 1.48504 * 109.47362 * 329.99862 * 13 11 9 17 17 C 1.54383 * 102.24983 * 325.86565 * 6 5 3 18 18 O 1.43231 * 107.58803 * 21.35863 * 17 6 5 19 19 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 21 21 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 22 22 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 23 23 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 24 24 H 1.09007 * 111.12229 * 273.28454 * 5 3 2 25 25 H 1.09005 * 111.12131 * 37.43726 * 5 3 2 26 26 H 0.97006 * 119.99792 * 19.39146 * 8 6 5 27 27 H 0.97004 * 120.00119 * 180.02562 * 12 11 9 28 28 H 1.08995 * 109.83066 * 261.84193 * 17 6 5 29 29 H 1.09000 * 109.82562 * 140.87397 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6217 1.9909 0.8441 5 6 3.5883 1.4657 0.0549 6 6 3.8855 2.8477 -0.5880 7 1 3.8174 3.6434 0.1539 8 7 5.1991 2.8540 -1.2367 9 6 5.8223 4.0424 -1.5096 10 1 5.3457 4.9751 -1.2462 11 6 7.0666 4.0483 -2.1247 12 7 7.6473 2.9117 -2.4461 13 14 7.9171 5.6694 -2.4963 14 1 8.7628 6.0611 -1.3402 15 1 8.7687 5.5164 -3.7032 16 1 6.8960 6.7195 -2.7409 17 6 2.7560 2.9726 -1.6330 18 8 1.6988 2.0920 -1.2349 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.9455 1.4261 1.0840 25 1 4.0145 0.6565 -0.5382 26 1 5.6273 2.0163 -1.4730 27 1 8.5170 2.9158 -2.8756 28 1 3.1279 2.6833 -2.6158 29 1 2.3910 3.9993 -1.6619 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575455664.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:45 Heat of formation + Delta-G solvation = -69.020741 kcal Electronic energy + Delta-G solvation = -11445.331052 eV Core-core repulsion = 9367.381739 eV Total energy + Delta-G solvation = -2077.949314 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47673 -36.40882 -34.42191 -33.53000 -30.72747 -28.59302 -25.74959 -24.28490 -22.21324 -21.25349 -19.32308 -17.72814 -17.09096 -16.31978 -15.71082 -15.43729 -14.77234 -14.51446 -14.10696 -13.92901 -13.31390 -13.09495 -12.73396 -12.53588 -12.38090 -12.14691 -12.06307 -11.80647 -11.71467 -11.36076 -10.98209 -10.38323 -9.10572 -7.99131 -5.30102 1.47199 1.48667 1.57277 2.52322 2.93775 3.33176 3.71561 3.76762 4.04047 4.17147 4.29963 4.37371 4.39027 4.56406 4.68753 4.88421 4.93308 5.04115 5.11304 5.13545 5.24428 5.36951 5.47670 5.49167 6.13645 6.24505 7.28605 7.99686 8.24697 9.24091 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.099946 B = 0.008403 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.084662 B = 3331.477181 C = 3453.870848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.080 3.920 4 H 0.082 0.918 5 C -0.150 4.150 6 C 0.141 3.859 7 H 0.065 0.935 8 N -0.727 5.727 9 C -0.251 4.251 10 H 0.078 0.922 11 C -0.071 4.071 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.285 1.285 15 H -0.295 1.295 16 H -0.269 1.269 17 C 0.036 3.964 18 O -0.397 6.397 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.043 0.957 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.375 0.625 27 H 0.253 0.747 28 H 0.047 0.953 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 -3.459 6.160 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.022 3.978 4 H 0.100 0.900 5 C -0.188 4.188 6 C 0.031 3.969 7 H 0.083 0.917 8 N -0.367 5.367 9 C -0.382 4.382 10 H 0.096 0.904 11 C -0.264 4.264 12 N -0.618 5.618 13 Si 0.804 3.196 14 H -0.212 1.212 15 H -0.222 1.222 16 H -0.194 1.194 17 C -0.043 4.043 18 O -0.317 6.317 19 H 0.086 0.914 20 H 0.081 0.919 21 H 0.062 0.938 22 H 0.112 0.888 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.208 0.792 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.307 -3.301 6.040 13.238 hybrid contribution 1.126 0.580 -0.550 1.381 sum -10.181 -2.721 5.491 11.883 Atomic orbital electron populations 1.21682 0.94580 1.02118 1.01840 1.21694 0.97326 0.93745 1.02995 1.23112 0.92901 0.94673 0.87070 0.89994 1.23452 0.96159 0.96845 1.02340 1.21930 0.85072 0.97037 0.92884 0.91675 1.42476 1.17383 1.05616 1.71271 1.19663 0.99773 0.87049 1.31729 0.90361 1.25601 0.98606 1.00232 1.01957 1.69817 1.17305 1.26330 1.48375 0.85115 0.78291 0.79228 0.76953 1.21163 1.22185 1.19369 1.23826 0.88402 0.93087 0.99026 1.88314 1.42167 1.60010 1.41177 0.91425 0.91931 0.93772 0.88812 0.92485 0.88651 0.91327 0.79220 0.93838 0.93491 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.83 71.98 0.71 -2.28 15 2 C -0.12 -2.81 5.68 30.60 0.17 -2.64 15 3 C 0.08 2.29 3.43 31.26 0.11 2.39 15 4 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 5 C -0.15 -4.87 6.20 32.05 0.20 -4.67 15 6 C 0.14 5.67 3.63 46.25 0.17 5.84 15 7 H 0.07 2.58 8.13 -2.39 -0.02 2.56 15 8 N -0.73 -37.01 5.19 -316.99 -1.64 -38.66 15 9 C -0.25 -13.90 9.98 84.03 0.84 -13.06 15 10 H 0.08 4.15 7.83 -2.91 -0.02 4.12 15 11 C -0.07 -4.08 5.50 84.86 0.47 -3.62 15 12 N -0.97 -59.14 13.06 21.65 0.28 -58.85 15 13 Si 0.98 45.82 29.55 68.60 2.03 47.85 15 14 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 15 H -0.30 -13.98 7.11 99.48 0.71 -13.28 15 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 17 C 0.04 1.42 7.56 72.45 0.55 1.97 15 18 O -0.40 -14.10 10.69 -148.98 -1.59 -15.69 15 19 H 0.07 1.15 8.14 -2.39 -0.02 1.13 15 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.04 1.05 7.91 -2.39 -0.02 1.03 15 22 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 24 H 0.09 2.73 8.14 -2.38 -0.02 2.71 15 25 H 0.07 2.37 7.92 -2.38 -0.02 2.35 15 26 H 0.38 20.47 7.72 -92.70 -0.72 19.76 15 27 H 0.25 14.94 8.31 -92.71 -0.77 14.16 15 28 H 0.05 2.06 8.02 -2.39 -0.02 2.04 15 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 Total: -1.00 -62.47 244.44 2.68 -59.79 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.40 Total: 21.62 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.21 Total: -16.06 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -1.36 Total: -97.51 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.59 Total: -15.69 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -62.47 2.68 -59.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575455664.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.231 kcal (2) G-P(sol) polarization free energy of solvation -62.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds