Wall clock time and date at job start Mon Mar 30 2020 20:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 H 1.08997 * 110.57170 * 303.77698 * 3 2 1 5 5 C 1.54481 * 110.50840 * 66.45587 * 3 2 1 6 6 O 1.44426 * 104.80557 * 142.62143 * 5 3 2 7 7 C 1.44427 * 105.27356 * 319.48756 * 6 5 3 8 8 C 1.54483 * 104.80403 * 40.51188 * 7 6 5 9 9 H 1.08995 * 110.50524 * 217.37531 * 8 7 6 10 10 N 1.46500 * 110.51330 * 94.66449 * 8 7 6 11 11 C 1.36938 * 120.00098 * 90.35460 * 10 8 7 12 12 H 1.08002 * 119.99521 * 0.02562 * 11 10 8 13 13 C 1.38812 * 120.00331 * 179.97438 * 11 10 8 14 14 N 1.31621 * 119.99507 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00066 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47427 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47181 * 120.00311 * 15 13 11 18 18 H 1.48508 * 109.46827 * 240.00096 * 15 13 11 19 19 H 1.09002 * 109.47330 * 59.99788 * 1 2 3 20 20 H 1.09005 * 109.47212 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47395 * 299.99575 * 1 2 3 22 22 H 1.08998 * 109.47395 * 240.00425 * 2 1 3 23 23 H 1.09002 * 109.47330 * 120.00212 * 2 1 3 24 24 H 1.09001 * 110.37739 * 23.79346 * 5 3 2 25 25 H 1.09002 * 110.36997 * 261.45343 * 5 3 2 26 26 H 1.09003 * 110.36930 * 159.33612 * 7 6 5 27 27 H 1.08994 * 110.37497 * 281.67702 * 7 6 5 28 28 H 0.97001 * 119.99849 * 270.36524 * 10 8 7 29 29 H 0.96996 * 119.99698 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6327 1.9927 -0.8482 5 6 1.6754 2.1454 1.3264 6 8 2.8138 2.9824 1.6256 7 6 3.9705 2.1872 1.2854 8 6 3.5845 1.4706 -0.0277 9 1 3.9848 0.4569 -0.0413 10 7 4.0634 2.2287 -1.1862 11 6 5.3058 1.9761 -1.7038 12 1 5.9323 1.2176 -1.2582 13 6 5.7594 2.6940 -2.8018 14 7 4.9955 3.6180 -3.3451 15 14 7.4538 2.3488 -3.5083 16 1 8.1080 1.2723 -2.7221 17 1 7.3218 1.9186 -4.9235 18 1 8.2788 3.5817 -3.4406 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.8933 -0.5137 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.5269 1.4101 2.1173 25 1 0.7799 2.7539 1.1998 26 1 4.8380 2.8279 1.1271 27 1 4.1739 1.4584 2.0698 28 1 3.5005 2.9098 -1.5865 29 1 5.3123 4.1194 -4.1126 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575481828.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:54 Heat of formation + Delta-G solvation = -47.756274 kcal Electronic energy + Delta-G solvation = -11634.163188 eV Core-core repulsion = 9557.135971 eV Total energy + Delta-G solvation = -2077.027217 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.05217 -34.46419 -33.80640 -31.09414 -28.22112 -27.30657 -23.72292 -23.50528 -20.69621 -19.78337 -17.06461 -15.83792 -15.18245 -15.08332 -14.37410 -13.77195 -13.39267 -13.08761 -12.80527 -12.09692 -11.78357 -11.54728 -11.01225 -10.95195 -10.67705 -10.44639 -10.26405 -10.20906 -9.99989 -9.68293 -9.36412 -8.81783 -6.95916 -5.78413 -3.07788 3.42454 3.47896 3.50369 4.55655 4.58966 5.11212 5.14531 5.32560 5.49422 5.57965 5.62609 5.74408 5.76098 5.92363 6.09039 6.14773 6.16671 6.28481 6.30614 6.47826 6.54360 6.74828 6.82879 7.43190 7.68449 8.39799 9.51059 10.08484 10.43547 11.44096 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.053140 B = 0.010633 C = 0.009849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.778802 B = 2632.699214 C = 2842.227951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.132 4.132 4 H 0.086 0.914 5 C 0.051 3.949 6 O -0.380 6.380 7 C 0.018 3.982 8 C 0.153 3.847 9 H 0.063 0.937 10 N -0.715 5.715 11 C -0.245 4.245 12 H 0.072 0.928 13 C -0.012 4.012 14 N -0.930 5.930 15 Si 0.908 3.092 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.291 1.291 19 H 0.054 0.946 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.040 0.960 28 H 0.386 0.614 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 -6.090 7.307 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.152 4.152 4 H 0.104 0.896 5 C -0.026 4.026 6 O -0.299 6.299 7 C -0.062 4.062 8 C 0.042 3.958 9 H 0.081 0.919 10 N -0.355 5.355 11 C -0.376 4.376 12 H 0.090 0.910 13 C -0.208 4.208 14 N -0.578 5.578 15 Si 0.739 3.261 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.218 1.218 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.220 0.780 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.428 -5.932 7.321 11.406 hybrid contribution 0.777 -0.081 -0.640 1.010 sum -5.651 -6.013 6.681 10.617 Atomic orbital electron populations 1.21801 0.96245 1.01121 1.01739 1.21489 0.95322 0.95930 1.02053 1.22894 0.97506 0.96223 0.98537 0.89611 1.23387 0.90385 0.93639 0.95202 1.89074 1.15340 1.38822 1.86634 1.24427 0.89589 0.95145 0.96995 1.21603 0.90688 0.95342 0.88202 0.91894 1.42457 1.17784 1.43527 1.31741 1.19320 0.92623 1.16266 1.09421 0.91029 1.24768 0.98541 0.98740 0.98743 1.69684 1.36739 1.26208 1.25175 0.86110 0.83895 0.77373 0.78752 1.20511 1.21835 1.21807 0.92662 0.93118 0.92943 0.91461 0.92256 0.93171 0.90183 0.88748 0.94133 0.77970 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.76 37.15 0.36 -1.41 15 2 C -0.11 -1.54 5.14 -26.74 -0.14 -1.68 15 3 C -0.13 -2.25 2.92 -89.05 -0.26 -2.51 15 4 H 0.09 1.60 7.70 -51.93 -0.40 1.20 15 5 C 0.05 0.82 6.32 37.93 0.24 1.06 15 6 O -0.38 -7.54 11.65 -35.23 -0.41 -7.95 15 7 C 0.02 0.36 7.35 37.94 0.28 0.63 15 8 C 0.15 3.14 3.43 -66.36 -0.23 2.91 15 9 H 0.06 1.26 7.68 -51.93 -0.40 0.87 15 10 N -0.71 -18.32 5.13 -51.90 -0.27 -18.59 15 11 C -0.25 -6.85 9.96 -15.06 -0.15 -7.00 15 12 H 0.07 1.93 7.83 -52.49 -0.41 1.52 15 13 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 15 14 N -0.93 -28.41 13.06 55.49 0.72 -27.69 15 15 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 15 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 19 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.05 0.56 7.49 -51.93 -0.39 0.17 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.06 0.76 8.06 -51.93 -0.42 0.35 15 24 H 0.05 0.70 7.81 -51.93 -0.41 0.29 15 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.09 2.04 8.06 -51.93 -0.42 1.62 15 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.39 10.64 7.58 -40.82 -0.31 10.33 15 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 242.31 15.07 3.65 3.65 Total: -1.00 -30.37 242.31 -5.71 -36.08 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.40 Total: 5.52 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 0.01 Total: -8.43 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.46 Total: -46.27 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.41 Total: -7.95 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.37 -5.71 -36.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575481828.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.676 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds