Wall clock time and date at job start Mon Mar 30 2020 20:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00167 * 2 1 4 4 H 1.09002 * 110.28748 * 330.69662 * 3 2 1 5 5 C 1.54380 * 110.32426 * 92.82516 * 3 2 1 6 6 N 1.48563 * 104.59624 * 95.14687 * 5 3 2 7 7 C 1.48560 * 104.22010 * 39.47751 * 6 5 3 8 8 H 1.09005 * 110.40910 * 79.41998 * 7 6 5 9 9 C 1.50705 * 110.40841 * 201.74084 * 7 6 5 10 10 H 1.07991 * 119.99876 * 118.55234 * 9 7 6 11 11 C 1.37882 * 119.99624 * 298.54500 * 9 7 6 12 12 N 1.31509 * 120.00250 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99412 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46848 * 90.00459 * 13 11 9 15 15 H 1.48493 * 109.46797 * 210.00225 * 13 11 9 16 16 H 1.48495 * 109.47243 * 330.00641 * 13 11 9 17 17 C 1.54263 * 110.40938 * 208.51223 * 3 2 1 18 18 H 1.09000 * 110.32301 * 359.95519 * 17 3 2 19 19 C 1.52995 * 110.32378 * 122.15779 * 17 3 2 20 20 H 1.08999 * 109.47023 * 300.00730 * 1 2 3 21 21 H 1.09006 * 109.46322 * 60.00373 * 1 2 3 22 22 H 1.08994 * 109.47459 * 180.02562 * 1 2 3 23 23 H 1.09005 * 110.41085 * 213.92084 * 5 3 2 24 24 H 1.08994 * 110.41486 * 336.24237 * 5 3 2 25 25 H 1.00897 * 111.00100 * 159.03737 * 6 5 3 26 26 H 0.96999 * 120.00042 * 179.97438 * 12 11 9 27 27 H 1.09003 * 109.47168 * 58.55150 * 19 17 3 28 28 H 1.09001 * 109.47338 * 178.54236 * 19 17 3 29 29 H 1.08993 * 109.47419 * 298.55053 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3495 2.0133 -0.5004 5 6 2.2936 1.7662 1.4459 6 7 3.7160 1.4076 1.6813 7 6 4.3903 1.7277 0.3968 8 1 4.5800 2.7986 0.3236 9 6 5.6796 0.9570 0.2738 10 1 5.8127 0.2529 -0.5340 11 6 6.6891 1.1511 1.1928 12 7 6.5267 2.0084 2.1768 13 14 8.2874 0.1964 1.0398 14 1 9.2430 0.9622 0.1997 15 1 8.8709 -0.0112 2.3894 16 1 8.0188 -1.1207 0.4087 17 6 3.3897 1.2801 -0.6901 18 1 3.6250 0.2712 -1.0290 19 6 3.4126 2.2562 -1.8680 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 2.1533 2.8435 1.5360 24 1 1.6459 1.2395 2.1466 25 1 4.1048 1.9491 2.4386 26 1 7.2367 2.1446 2.8234 27 1 3.1884 3.2615 -1.5113 28 1 4.4002 2.2463 -2.3291 29 1 2.6655 1.9564 -2.6029 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584621645.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:03 Heat of formation + Delta-G solvation = -49.054893 kcal Electronic energy + Delta-G solvation = -11824.064134 eV Core-core repulsion = 9746.980605 eV Total energy + Delta-G solvation = -2077.083529 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.50140 -35.72914 -32.29779 -31.04432 -28.00758 -26.44682 -25.01013 -23.27927 -20.36692 -18.97823 -16.76925 -15.92754 -15.04422 -14.55596 -14.42841 -13.88538 -13.27684 -12.56169 -12.31700 -11.82584 -11.70566 -11.35211 -10.96485 -10.95104 -10.81456 -10.64409 -10.39551 -9.84526 -9.36424 -9.10473 -8.90825 -8.45781 -6.96977 -5.99355 -3.99246 3.36061 3.42742 3.47838 4.30449 4.51013 5.23359 5.41773 5.49173 5.64674 5.69757 5.71528 5.87545 5.98066 6.16951 6.24858 6.26267 6.31625 6.67412 6.79299 6.88966 6.95613 7.46551 7.81572 7.96894 8.18678 8.57503 8.95191 9.04125 9.66468 11.13270 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055448 B = 0.011821 C = 0.011388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.858542 B = 2368.143350 C = 2458.083886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.089 3.911 4 H 0.051 0.949 5 C 0.008 3.992 6 N -0.644 5.644 7 C 0.207 3.793 8 H 0.007 0.993 9 C -0.497 4.497 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.092 4.092 18 H 0.083 0.917 19 C -0.134 4.134 20 H 0.035 0.965 21 H 0.033 0.967 22 H 0.078 0.922 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.342 0.658 26 H 0.261 0.739 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 0.475 -3.844 9.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C 0.031 3.969 4 H 0.069 0.931 5 C -0.123 4.123 6 N -0.276 5.276 7 C 0.100 3.900 8 H 0.024 0.976 9 C -0.536 4.536 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.111 4.111 18 H 0.101 0.899 19 C -0.192 4.192 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.097 0.903 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.160 0.840 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.320 -0.355 -3.765 9.139 hybrid contribution 0.588 0.795 0.132 0.998 sum -7.732 0.440 -3.633 8.554 Atomic orbital electron populations 1.22696 0.82931 1.01859 0.99129 1.88038 1.17888 1.28319 1.94802 1.23082 0.94875 0.83291 0.95661 0.93112 1.23358 0.96184 0.96375 0.96362 1.64040 0.98079 1.57219 1.08231 1.20031 0.91213 0.94333 0.84445 0.97573 1.21050 0.97420 1.23730 1.11397 0.92271 1.24964 0.98484 0.94842 0.95026 1.69802 1.33625 1.35274 1.14929 0.86535 0.83335 0.80501 0.77195 1.20901 1.21309 1.19845 1.22145 0.92651 1.00396 0.95919 0.89863 1.21760 1.01435 0.98476 0.97520 0.94665 0.94882 0.90341 0.95921 0.91849 0.84033 0.92973 0.93623 0.91921 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.86 101.05 1.10 1.54 15 2 O -0.37 -7.34 10.31 -35.23 -0.36 -7.70 15 3 C 0.09 1.76 3.18 -25.35 -0.08 1.68 15 4 H 0.05 0.88 7.40 -51.93 -0.38 0.49 15 5 C 0.01 0.17 7.21 -2.18 -0.02 0.15 15 6 N -0.64 -16.32 7.07 -103.95 -0.74 -17.06 15 7 C 0.21 5.34 2.57 -67.22 -0.17 5.17 15 8 H 0.01 0.18 7.85 -51.93 -0.41 -0.23 15 9 C -0.50 -14.10 8.75 -34.44 -0.30 -14.40 15 10 H 0.06 1.66 7.58 -52.49 -0.40 1.27 15 11 C 0.07 1.95 5.41 -17.82 -0.10 1.85 15 12 N -0.90 -25.92 12.08 55.43 0.67 -25.25 15 13 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 15 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 17 C -0.09 -2.02 3.00 -89.24 -0.27 -2.29 15 18 H 0.08 1.97 7.55 -51.93 -0.39 1.58 15 19 C -0.13 -2.46 8.91 37.15 0.33 -2.12 15 20 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.03 0.41 8.10 -51.93 -0.42 -0.01 15 22 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.06 1.26 8.08 -51.93 -0.42 0.84 15 25 H 0.34 9.01 7.79 -39.29 -0.31 8.70 15 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 27 H 0.04 0.79 8.13 -51.93 -0.42 0.37 15 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 LS Contribution 241.70 15.07 3.64 3.64 Total: -1.00 -30.00 241.70 -5.71 -35.71 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.40 Total: 2.25 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 0.49 Total: -8.42 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.07 Total: -42.31 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.36 Total: -7.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.00 -5.71 -35.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584621645.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.344 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds