Wall clock time and date at job start Mon Mar 30 2020 20:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00167 * 2 1 4 4 H 1.09002 * 110.28748 * 330.69662 * 3 2 1 5 5 C 1.54380 * 110.32426 * 92.82516 * 3 2 1 6 6 N 1.48563 * 104.59624 * 95.14687 * 5 3 2 7 7 C 1.48560 * 104.22010 * 39.47751 * 6 5 3 8 8 H 1.09005 * 110.40910 * 79.41998 * 7 6 5 9 9 C 1.50705 * 110.40841 * 201.74084 * 7 6 5 10 10 H 1.07991 * 119.99876 * 118.55234 * 9 7 6 11 11 C 1.37882 * 119.99624 * 298.54500 * 9 7 6 12 12 N 1.31509 * 120.00250 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99412 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46848 * 90.00459 * 13 11 9 15 15 H 1.48493 * 109.46797 * 210.00225 * 13 11 9 16 16 H 1.48495 * 109.47243 * 330.00641 * 13 11 9 17 17 C 1.54263 * 110.40938 * 208.51223 * 3 2 1 18 18 H 1.09000 * 110.32301 * 359.95519 * 17 3 2 19 19 C 1.52995 * 110.32378 * 122.15779 * 17 3 2 20 20 H 1.08999 * 109.47023 * 300.00730 * 1 2 3 21 21 H 1.09006 * 109.46322 * 60.00373 * 1 2 3 22 22 H 1.08994 * 109.47459 * 180.02562 * 1 2 3 23 23 H 1.09005 * 110.41085 * 213.92084 * 5 3 2 24 24 H 1.08994 * 110.41486 * 336.24237 * 5 3 2 25 25 H 1.00897 * 111.00100 * 159.03737 * 6 5 3 26 26 H 0.96999 * 120.00042 * 179.97438 * 12 11 9 27 27 H 1.09003 * 109.47168 * 58.55150 * 19 17 3 28 28 H 1.09001 * 109.47338 * 178.54236 * 19 17 3 29 29 H 1.08993 * 109.47419 * 298.55053 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3495 2.0133 -0.5004 5 6 2.2936 1.7662 1.4459 6 7 3.7160 1.4076 1.6813 7 6 4.3903 1.7277 0.3968 8 1 4.5800 2.7986 0.3236 9 6 5.6796 0.9570 0.2738 10 1 5.8127 0.2529 -0.5340 11 6 6.6891 1.1511 1.1928 12 7 6.5267 2.0084 2.1768 13 14 8.2874 0.1964 1.0398 14 1 9.2430 0.9622 0.1997 15 1 8.8709 -0.0112 2.3894 16 1 8.0188 -1.1207 0.4087 17 6 3.3897 1.2801 -0.6901 18 1 3.6250 0.2712 -1.0290 19 6 3.4126 2.2562 -1.8680 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 2.1533 2.8435 1.5360 24 1 1.6459 1.2395 2.1466 25 1 4.1048 1.9491 2.4386 26 1 7.2367 2.1446 2.8234 27 1 3.1884 3.2615 -1.5113 28 1 4.4002 2.2463 -2.3291 29 1 2.6655 1.9564 -2.6029 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584621645.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:03 Heat of formation + Delta-G solvation = -71.251621 kcal Electronic energy + Delta-G solvation = -11825.026656 eV Core-core repulsion = 9746.980605 eV Total energy + Delta-G solvation = -2078.046052 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.11539 -37.33424 -34.38111 -32.73532 -29.80847 -27.87671 -26.63612 -25.09132 -22.11548 -20.72062 -18.71070 -17.49406 -16.90788 -16.35511 -15.88017 -15.38971 -15.03595 -14.26498 -13.82810 -13.56151 -13.47367 -13.09148 -12.74774 -12.53301 -12.43392 -12.30238 -12.06970 -11.57188 -11.34199 -10.95178 -10.59898 -10.38639 -8.91211 -8.13510 -6.20964 1.41858 1.44149 1.54458 2.45337 2.97355 3.15518 3.85687 3.91740 4.05295 4.40661 4.44715 4.55873 4.58405 4.65691 4.70482 4.79525 4.87426 5.03904 5.11447 5.24356 5.32508 5.54774 5.79160 6.17441 6.40853 6.59168 6.91862 6.94960 7.48112 8.97804 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.055448 B = 0.011821 C = 0.011388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.858542 B = 2368.143350 C = 2458.083886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.097 3.903 4 H 0.085 0.915 5 C 0.007 3.993 6 N -0.666 5.666 7 C 0.203 3.797 8 H -0.018 1.018 9 C -0.523 4.523 10 H 0.050 0.950 11 C 0.021 3.979 12 N -0.920 5.920 13 Si 0.959 3.041 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.093 4.093 18 H 0.058 0.942 19 C -0.127 4.127 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.095 0.905 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.330 0.670 26 H 0.262 0.738 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 0.377 -4.572 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.039 3.961 4 H 0.103 0.897 5 C -0.124 4.124 6 N -0.296 5.296 7 C 0.096 3.904 8 H -0.001 1.001 9 C -0.561 4.561 10 H 0.069 0.931 11 C -0.179 4.179 12 N -0.560 5.560 13 Si 0.785 3.215 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.112 4.112 18 H 0.076 0.924 19 C -0.184 4.184 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.113 0.887 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.146 0.854 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.377 -0.456 -4.505 10.413 hybrid contribution 0.837 0.809 0.378 1.224 sum -8.540 0.353 -4.127 9.492 Atomic orbital electron populations 1.22982 0.80042 1.03610 1.00684 1.87992 1.21099 1.28227 1.94922 1.22968 0.94310 0.84323 0.94488 0.89713 1.23470 0.93547 0.97549 0.97785 1.63940 1.00530 1.57545 1.07601 1.19958 0.91760 0.92479 0.86237 1.00075 1.21390 0.99274 1.24025 1.11459 0.93130 1.25729 1.01648 0.95741 0.94747 1.69909 1.34491 1.36191 1.15365 0.85554 0.79578 0.79113 0.77287 1.19780 1.20924 1.19817 1.22059 0.93239 0.99766 0.96132 0.92352 1.21691 1.02025 0.98023 0.96688 0.93602 0.92710 0.88663 0.94346 0.90893 0.85446 0.92894 0.92668 0.92881 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.86 113.37 1.23 1.81 15 2 O -0.40 -15.06 10.31 -148.98 -1.54 -16.59 15 3 C 0.10 3.63 3.18 31.49 0.10 3.73 15 4 H 0.09 2.59 7.40 -2.39 -0.02 2.58 15 5 C 0.01 0.27 7.21 86.45 0.62 0.89 15 6 N -0.67 -34.07 7.07 -482.78 -3.41 -37.48 15 7 C 0.20 10.65 2.57 44.32 0.11 10.76 15 8 H -0.02 -1.03 7.85 -2.38 -0.02 -1.04 15 9 C -0.52 -30.24 8.75 25.60 0.22 -30.02 15 10 H 0.05 2.92 7.58 -2.92 -0.02 2.89 15 11 C 0.02 1.19 5.41 84.66 0.46 1.65 15 12 N -0.92 -53.94 12.08 21.45 0.26 -53.68 15 13 Si 0.96 45.22 29.54 68.60 2.03 47.25 15 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 15 H -0.28 -13.11 7.11 99.48 0.71 -12.41 15 16 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 17 C -0.09 -4.01 3.00 -9.90 -0.03 -4.04 15 18 H 0.06 2.79 7.55 -2.39 -0.02 2.77 15 19 C -0.13 -4.41 8.91 71.98 0.64 -3.77 15 20 H 0.05 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.05 1.15 8.10 -2.38 -0.02 1.13 15 22 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.04 1.43 8.14 -2.38 -0.02 1.41 15 24 H 0.07 2.78 8.08 -2.39 -0.02 2.76 15 25 H 0.33 17.74 7.79 -89.70 -0.70 17.05 15 26 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 27 H 0.05 1.80 8.13 -2.39 -0.02 1.78 15 28 H 0.05 1.91 8.14 -2.39 -0.02 1.90 15 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 Total: -1.00 -64.52 241.70 1.12 -63.41 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.42 Total: 16.10 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 3.36 Total: -18.99 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -3.16 Total: -91.17 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.54 Total: -16.59 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.52 1.12 -63.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584621645.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.846 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds