Wall clock time and date at job start Mon Mar 30 2020 20:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47207 * 2 1 4 4 C 1.36939 * 119.99630 * 264.26618 * 3 2 1 5 5 H 1.07998 * 119.99928 * 143.75381 * 4 3 2 6 6 C 1.38815 * 119.99824 * 323.75454 * 4 3 2 7 7 N 1.31619 * 119.99605 * 156.96748 * 6 4 3 8 8 Si 1.86797 * 120.00198 * 336.96773 * 6 4 3 9 9 H 1.48497 * 109.47041 * 95.82586 * 8 6 4 10 10 H 1.48507 * 109.46980 * 215.82736 * 8 6 4 11 11 H 1.48501 * 109.47195 * 335.82541 * 8 6 4 12 12 C 1.46497 * 120.00473 * 84.26667 * 3 2 1 13 13 H 1.09001 * 112.84568 * 11.19129 * 12 3 2 14 14 C 1.53950 * 113.74399 * 142.39898 * 12 3 2 15 15 C 1.53783 * 87.02021 * 139.94650 * 14 12 3 16 16 C 1.53777 * 113.61582 * 240.00171 * 12 3 2 17 17 H 1.09004 * 113.69188 * 105.37006 * 16 12 3 18 18 O 1.42899 * 113.61218 * 334.47836 * 16 12 3 19 19 H 1.08996 * 109.47072 * 300.00818 * 1 2 3 20 20 H 1.09006 * 109.46619 * 60.00452 * 1 2 3 21 21 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47072 * 239.99182 * 2 1 3 23 23 H 1.09006 * 109.46619 * 119.99548 * 2 1 3 24 24 H 0.97002 * 119.99903 * 179.97438 * 7 6 4 25 25 H 1.08999 * 113.61683 * 25.42560 * 14 12 3 26 26 H 1.09001 * 113.66918 * 254.47327 * 14 12 3 27 27 H 1.08999 * 113.61778 * 220.05320 * 15 14 12 28 28 H 1.08995 * 113.61672 * 89.22462 * 15 14 12 29 29 H 0.96697 * 113.99862 * 182.99810 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3583 1.9872 -1.1800 5 1 2.1559 3.0380 -1.3254 6 6 2.9632 1.2507 -2.1894 7 7 2.8855 1.6585 -3.4384 8 14 3.8871 -0.3190 -1.7750 9 1 2.9909 -1.4869 -1.9696 10 1 5.0685 -0.4477 -2.6657 11 1 4.3366 -0.2701 -0.3605 12 6 2.1431 2.1141 1.2623 13 1 2.0312 1.4731 2.1367 14 6 3.3774 3.0320 1.3268 15 6 2.4760 4.0605 2.0301 16 6 1.2874 3.3905 1.3207 17 1 0.4014 3.2954 1.9484 18 8 1.0003 3.9464 0.0359 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.3085 1.1441 -4.1437 25 1 3.7308 3.3579 0.3485 26 1 4.1767 2.6467 1.9599 27 1 2.6530 5.0874 1.7101 28 1 2.4543 3.9529 3.1145 29 1 0.5014 4.7741 0.0681 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642861160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:19 Heat of formation + Delta-G solvation = 2.853101 kcal Electronic energy + Delta-G solvation = -12168.575137 eV Core-core repulsion = 10093.742507 eV Total energy + Delta-G solvation = -2074.832630 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.75086 -35.09788 -33.48984 -31.48715 -28.97050 -25.03066 -24.06252 -23.05694 -20.83607 -18.85050 -16.47001 -16.26576 -15.17055 -14.61768 -14.40025 -13.27745 -13.05564 -12.82188 -12.16743 -11.93458 -11.56311 -11.37581 -11.21525 -10.75031 -10.48888 -10.29962 -10.08499 -9.71662 -9.52323 -9.21081 -8.88464 -8.32440 -6.61217 -5.79147 -3.16647 3.40787 3.56169 3.61400 4.63537 4.90070 5.15047 5.29787 5.45795 5.50880 5.77771 5.81901 6.00817 6.11434 6.20246 6.35056 6.38596 6.47694 6.56445 6.64067 6.89056 6.97304 7.14820 7.24617 8.23947 8.48377 8.75481 9.28196 9.94523 10.31849 11.36424 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.039512 B = 0.017904 C = 0.016491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.481249 B = 1563.496727 C = 1697.442091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 N -0.583 5.583 4 C -0.239 4.239 5 H 0.108 0.892 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.867 3.133 9 H -0.290 1.290 10 H -0.304 1.304 11 H -0.272 1.272 12 C 0.162 3.838 13 H 0.080 0.920 14 C -0.141 4.141 15 C -0.179 4.179 16 C 0.061 3.939 17 H 0.041 0.959 18 O -0.505 6.505 19 H 0.040 0.960 20 H 0.059 0.941 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.259 0.741 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 1.282 10.214 10.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.000 4.000 3 N -0.302 5.302 4 C -0.367 4.367 5 H 0.125 0.875 6 C -0.174 4.174 7 N -0.549 5.549 8 Si 0.698 3.302 9 H -0.218 1.218 10 H -0.233 1.233 11 H -0.197 1.197 12 C 0.052 3.948 13 H 0.098 0.902 14 C -0.180 4.180 15 C -0.217 4.217 16 C -0.002 4.002 17 H 0.059 0.941 18 O -0.307 6.307 19 H 0.059 0.941 20 H 0.078 0.922 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.226 0.687 9.811 10.084 hybrid contribution 0.260 -0.455 0.405 0.663 sum -1.965 0.231 10.216 10.406 Atomic orbital electron populations 1.22239 0.99019 0.99051 1.01643 1.21200 0.92724 0.87058 0.98972 1.44165 1.73087 1.10387 1.02575 1.19222 1.31454 0.97563 0.88454 0.87518 1.25519 0.98911 0.97417 0.95531 1.69886 1.45691 1.40483 0.98819 0.87064 0.80226 0.84725 0.78209 1.21827 1.23276 1.19694 1.21972 0.93455 0.90002 0.89344 0.90185 1.23365 0.96852 0.96644 1.01170 1.23458 1.00242 0.99237 0.98805 1.23711 0.94170 0.97400 0.84870 0.94068 1.87090 1.76826 1.40879 1.25907 0.94065 0.92183 0.94565 0.92473 0.95061 0.93143 0.88182 0.93335 0.91804 0.91000 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.23 37.16 0.38 -2.81 15 2 C 0.13 2.85 5.05 -4.04 -0.02 2.83 15 3 N -0.58 -14.19 2.30 -164.64 -0.38 -14.57 15 4 C -0.24 -6.76 7.69 -15.06 -0.12 -6.88 15 5 H 0.11 3.28 5.72 -52.49 -0.30 2.98 15 6 C 0.02 0.72 5.26 -17.43 -0.09 0.63 15 7 N -0.91 -28.52 13.97 55.49 0.78 -27.74 15 8 Si 0.87 22.85 25.02 -169.99 -4.25 18.60 15 9 H -0.29 -7.47 6.68 56.52 0.38 -7.10 15 10 H -0.30 -8.17 7.11 56.52 0.40 -7.76 15 11 H -0.27 -7.03 7.11 56.52 0.40 -6.63 15 12 C 0.16 3.28 4.41 -67.03 -0.30 2.99 15 13 H 0.08 1.44 8.03 -51.93 -0.42 1.03 15 14 C -0.14 -2.74 7.49 -25.83 -0.19 -2.94 15 15 C -0.18 -2.86 7.91 -25.92 -0.20 -3.07 15 16 C 0.06 1.11 5.21 -25.92 -0.14 0.98 15 17 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 18 O -0.51 -10.32 10.31 -35.23 -0.36 -10.68 15 19 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.06 1.33 8.14 -51.93 -0.42 0.90 15 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.06 1.43 3.45 -51.93 -0.18 1.25 15 23 H 0.03 0.64 8.06 -51.93 -0.42 0.22 15 24 H 0.26 7.76 8.31 -40.82 -0.34 7.42 15 25 H 0.10 2.29 6.97 -51.93 -0.36 1.92 15 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 15 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 29 H 0.35 5.29 9.12 45.56 0.42 5.70 15 LS Contribution 232.40 15.07 3.50 3.50 Total: -1.00 -32.12 232.40 -4.77 -36.90 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.38 Total: 2.26 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.68 Total: -8.27 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.40 Total: -42.31 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.36 Total: -10.68 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.25 Total: 18.60 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.12 -4.77 -36.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642861160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.751 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds