Wall clock time and date at job start Mon Mar 30 2020 20:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47207 * 2 1 4 4 C 1.36939 * 119.99630 * 264.26618 * 3 2 1 5 5 H 1.07998 * 119.99928 * 143.75381 * 4 3 2 6 6 C 1.38815 * 119.99824 * 323.75454 * 4 3 2 7 7 N 1.31619 * 119.99605 * 156.96748 * 6 4 3 8 8 Si 1.86797 * 120.00198 * 336.96773 * 6 4 3 9 9 H 1.48497 * 109.47041 * 95.82586 * 8 6 4 10 10 H 1.48507 * 109.46980 * 215.82736 * 8 6 4 11 11 H 1.48501 * 109.47195 * 335.82541 * 8 6 4 12 12 C 1.46497 * 120.00473 * 84.26667 * 3 2 1 13 13 H 1.09001 * 112.84568 * 11.19129 * 12 3 2 14 14 C 1.53950 * 113.74399 * 142.39898 * 12 3 2 15 15 C 1.53783 * 87.02021 * 139.94650 * 14 12 3 16 16 C 1.53777 * 113.61582 * 240.00171 * 12 3 2 17 17 H 1.09004 * 113.69188 * 105.37006 * 16 12 3 18 18 O 1.42899 * 113.61218 * 334.47836 * 16 12 3 19 19 H 1.08996 * 109.47072 * 300.00818 * 1 2 3 20 20 H 1.09006 * 109.46619 * 60.00452 * 1 2 3 21 21 H 1.08997 * 109.47487 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47072 * 239.99182 * 2 1 3 23 23 H 1.09006 * 109.46619 * 119.99548 * 2 1 3 24 24 H 0.97002 * 119.99903 * 179.97438 * 7 6 4 25 25 H 1.08999 * 113.61683 * 25.42560 * 14 12 3 26 26 H 1.09001 * 113.66918 * 254.47327 * 14 12 3 27 27 H 1.08999 * 113.61778 * 220.05320 * 15 14 12 28 28 H 1.08995 * 113.61672 * 89.22462 * 15 14 12 29 29 H 0.96697 * 113.99862 * 182.99810 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3583 1.9872 -1.1800 5 1 2.1559 3.0380 -1.3254 6 6 2.9632 1.2507 -2.1894 7 7 2.8855 1.6585 -3.4384 8 14 3.8871 -0.3190 -1.7750 9 1 2.9909 -1.4869 -1.9696 10 1 5.0685 -0.4477 -2.6657 11 1 4.3366 -0.2701 -0.3605 12 6 2.1431 2.1141 1.2623 13 1 2.0312 1.4731 2.1367 14 6 3.3774 3.0320 1.3268 15 6 2.4760 4.0605 2.0301 16 6 1.2874 3.3905 1.3207 17 1 0.4014 3.2954 1.9484 18 8 1.0003 3.9464 0.0359 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.3085 1.1441 -4.1437 25 1 3.7308 3.3579 0.3485 26 1 4.1767 2.6467 1.9599 27 1 2.6530 5.0874 1.7101 28 1 2.4543 3.9529 3.1145 29 1 0.5014 4.7741 0.0681 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642861160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:18 Heat of formation + Delta-G solvation = -21.431941 kcal Electronic energy + Delta-G solvation = -12169.628216 eV Core-core repulsion = 10093.742507 eV Total energy + Delta-G solvation = -2075.885708 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.28672 -36.87344 -35.07119 -33.59244 -30.74829 -26.85651 -25.54752 -24.78204 -22.61425 -20.45396 -18.31126 -17.96042 -17.10026 -16.26831 -15.95290 -15.08845 -14.90450 -14.44593 -14.05047 -13.64106 -13.24236 -12.95171 -12.91304 -12.58540 -12.28228 -12.10392 -11.59380 -11.47710 -11.36418 -11.06018 -10.47209 -10.31714 -8.55797 -8.03064 -5.36179 1.31075 1.41700 1.52018 2.51111 3.16646 3.33729 3.74436 3.91176 4.04147 4.29379 4.31525 4.41767 4.68370 4.72352 4.78593 4.91025 4.98846 5.07854 5.18330 5.21033 5.48460 5.50795 5.68048 6.12299 6.63540 7.06249 7.31363 7.84438 8.21967 9.16991 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.039512 B = 0.017904 C = 0.016491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.481249 B = 1563.496727 C = 1697.442091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.115 3.885 3 N -0.598 5.598 4 C -0.209 4.209 5 H 0.075 0.925 6 C -0.042 4.042 7 N -0.961 5.961 8 Si 0.931 3.069 9 H -0.282 1.282 10 H -0.317 1.317 11 H -0.260 1.260 12 C 0.142 3.858 13 H 0.114 0.886 14 C -0.150 4.150 15 C -0.153 4.153 16 C 0.059 3.941 17 H 0.070 0.930 18 O -0.545 6.545 19 H 0.060 0.940 20 H 0.026 0.974 21 H 0.065 0.935 22 H 0.031 0.969 23 H 0.062 0.938 24 H 0.255 0.745 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 0.645 13.289 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 N -0.318 5.318 4 C -0.339 4.339 5 H 0.092 0.908 6 C -0.235 4.235 7 N -0.608 5.608 8 Si 0.761 3.239 9 H -0.210 1.210 10 H -0.246 1.246 11 H -0.185 1.185 12 C 0.035 3.965 13 H 0.132 0.868 14 C -0.190 4.190 15 C -0.192 4.192 16 C -0.003 4.003 17 H 0.088 0.912 18 O -0.350 6.350 19 H 0.079 0.921 20 H 0.045 0.955 21 H 0.083 0.917 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.790 0.053 12.955 13.252 hybrid contribution 0.357 -0.163 -0.448 0.596 sum -2.433 -0.110 12.507 12.742 Atomic orbital electron populations 1.22091 0.97023 1.00765 1.00912 1.21345 0.94421 0.86081 0.99096 1.44284 1.73614 1.11172 1.02776 1.19084 1.28794 0.96270 0.89748 0.90785 1.26084 1.00842 1.01150 0.95424 1.70022 1.48209 1.42712 0.99865 0.86013 0.78398 0.81523 0.77928 1.20953 1.24631 1.18480 1.22500 0.94576 0.90912 0.88511 0.86843 1.23282 0.97672 0.98229 0.99773 1.23373 0.97031 0.98292 1.00453 1.23679 0.95827 0.96310 0.84463 0.91200 1.86998 1.77569 1.42446 1.27961 0.92145 0.95453 0.91657 0.95132 0.91956 0.93657 0.92752 0.91686 0.91472 0.87157 0.78534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 10.23 71.98 0.74 -4.79 15 2 C 0.12 4.93 5.05 86.38 0.44 5.37 15 3 N -0.60 -28.23 2.30 -674.79 -1.55 -29.78 15 4 C -0.21 -12.03 7.69 84.03 0.65 -11.38 15 5 H 0.07 4.73 5.72 -2.91 -0.02 4.72 15 6 C -0.04 -2.54 5.26 84.86 0.45 -2.10 15 7 N -0.96 -63.00 13.97 21.65 0.30 -62.70 15 8 Si 0.93 48.19 25.02 68.60 1.72 49.91 15 9 H -0.28 -14.01 6.68 99.48 0.66 -13.35 15 10 H -0.32 -16.83 7.11 99.48 0.71 -16.12 15 11 H -0.26 -12.77 7.11 99.48 0.71 -12.06 15 12 C 0.14 5.35 4.41 45.57 0.20 5.55 15 13 H 0.11 3.50 8.03 -2.39 -0.02 3.48 15 14 C -0.15 -5.53 7.49 31.18 0.23 -5.30 15 15 C -0.15 -4.33 7.91 31.12 0.25 -4.08 15 16 C 0.06 1.95 5.21 31.12 0.16 2.12 15 17 H 0.07 1.94 8.14 -2.38 -0.02 1.92 15 18 O -0.54 -21.85 10.31 -148.98 -1.54 -23.39 15 19 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 20 H 0.03 1.16 8.14 -2.38 -0.02 1.14 15 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.03 1.47 3.45 -2.39 -0.01 1.47 15 23 H 0.06 2.27 8.06 -2.38 -0.02 2.26 15 24 H 0.25 15.97 8.31 -92.71 -0.77 15.20 15 25 H 0.05 2.50 6.97 -2.39 -0.02 2.49 15 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 28 H 0.11 2.34 8.14 -2.39 -0.02 2.32 15 29 H 0.37 10.87 9.12 -74.06 -0.68 10.19 15 Total: -1.00 -71.45 232.40 2.46 -69.00 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.42 Total: 11.58 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 3.11 Total: -14.62 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -1.25 Total: -92.48 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -1.54 Total: -23.39 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.72 Total: 49.91 kcal Total: -71.45 2.46 -69.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642861160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.565 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds