Wall clock time and date at job start Mon Mar 30 2020 20:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.45543 * 2 1 4 4 C 1.54481 * 110.51051 * 237.25282 * 2 1 3 5 5 O 1.44433 * 104.79985 * 265.33662 * 4 2 1 6 6 C 1.44423 * 105.27356 * 319.48225 * 5 4 2 7 7 C 1.54482 * 104.80247 * 40.51517 * 6 5 4 8 8 H 1.09013 * 110.62784 * 94.71750 * 7 6 5 9 9 N 1.46492 * 110.51588 * 217.37034 * 7 6 5 10 10 C 1.46504 * 119.99714 * 54.64279 * 9 7 6 11 11 C 1.36936 * 120.00671 * 234.64404 * 9 7 6 12 12 H 1.08001 * 119.99736 * 334.63801 * 11 9 7 13 13 C 1.38818 * 120.00141 * 154.63894 * 11 9 7 14 14 N 1.31618 * 119.99903 * 4.01126 * 13 11 9 15 15 Si 1.86800 * 119.99547 * 184.00859 * 13 11 9 16 16 H 1.48496 * 109.47372 * 90.00305 * 15 13 11 17 17 H 1.48506 * 109.46573 * 209.99724 * 15 13 11 18 18 H 1.48498 * 109.47266 * 329.99623 * 15 13 11 19 19 H 1.09004 * 109.46905 * 297.39433 * 1 2 3 20 20 H 1.09004 * 109.46920 * 57.38789 * 1 2 3 21 21 H 1.08992 * 109.47090 * 177.39225 * 1 2 3 22 22 H 1.09004 * 110.37259 * 24.16002 * 4 2 1 23 23 H 1.08996 * 110.37715 * 146.39426 * 4 2 1 24 24 H 1.08995 * 110.38017 * 281.68516 * 6 5 4 25 25 H 1.08996 * 110.37209 * 159.34246 * 6 5 4 26 26 H 1.08996 * 109.47594 * 264.47803 * 10 9 7 27 27 H 1.09003 * 109.47391 * 144.47791 * 10 9 7 28 28 H 1.09004 * 109.46941 * 24.47886 * 10 9 7 29 29 H 0.96996 * 119.99876 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7827 -1.2169 5 8 2.3069 -2.1187 -0.7212 6 6 2.8758 -1.9415 0.5944 7 6 2.0715 -0.7798 1.2190 8 1 1.2490 -1.1633 1.8230 9 7 2.9457 0.0735 2.0273 10 6 4.1532 0.6548 1.4352 11 6 2.6345 0.3280 3.3363 12 1 1.6082 0.2725 3.6680 13 6 3.6381 0.6574 4.2370 14 7 4.8772 0.8026 3.8175 15 14 3.2300 0.8948 6.0444 16 1 3.3598 -0.4023 6.7556 17 1 4.1681 1.8809 6.6382 18 1 1.8378 1.3944 6.1760 19 1 -0.3633 0.4729 0.9125 20 1 -0.3633 0.5539 -0.8657 21 1 -0.3633 -1.0265 -0.0468 22 1 1.3310 -0.7999 -2.0168 23 1 3.0013 -0.3380 -1.5710 24 1 3.9301 -1.6757 0.5194 25 1 2.7535 -2.8488 1.1859 26 1 5.0104 0.0209 1.6618 27 1 4.3178 1.6499 1.8486 28 1 4.0297 0.7262 0.3545 29 1 5.5785 1.0324 4.4469 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688198251.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:29 Heat of formation + Delta-G solvation = -44.579682 kcal Electronic energy + Delta-G solvation = -11976.119508 eV Core-core repulsion = 9899.230039 eV Total energy + Delta-G solvation = -2076.889470 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.59607 -36.96987 -34.18219 -32.70124 -29.49851 -28.12678 -27.07003 -24.88802 -22.52314 -20.71132 -18.93090 -17.59002 -16.90878 -16.31080 -15.96176 -15.35028 -14.68292 -14.28517 -14.24636 -13.45697 -13.30121 -13.12238 -12.73648 -12.56838 -12.38902 -12.12167 -11.88824 -11.86314 -11.58329 -11.53112 -10.74133 -10.52955 -8.76159 -7.86032 -5.35374 1.46544 1.47881 1.56472 2.47548 3.07326 3.28172 3.73666 3.82524 4.06575 4.16168 4.34929 4.38090 4.65685 4.72278 4.88460 4.90689 4.92826 5.09086 5.10111 5.27310 5.37454 5.47087 5.59687 5.72863 5.89633 6.33258 7.14264 7.83733 8.28972 9.17421 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.060212 B = 0.012266 C = 0.011438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.913346 B = 2282.251211 C = 2447.468128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.144 4.144 3 H 0.071 0.929 4 C 0.052 3.948 5 O -0.391 6.391 6 C 0.034 3.966 7 C 0.146 3.854 8 H 0.071 0.929 9 N -0.608 5.608 10 C 0.184 3.816 11 C -0.268 4.268 12 H 0.072 0.928 13 C -0.050 4.050 14 N -0.939 5.939 15 Si 0.972 3.028 16 H -0.285 1.285 17 H -0.294 1.294 18 H -0.269 1.269 19 H 0.046 0.954 20 H 0.073 0.927 21 H 0.059 0.941 22 H 0.113 0.887 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.000 1.000 27 H 0.025 0.975 28 H 0.020 0.980 29 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 -1.642 -7.049 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 H 0.089 0.911 4 C -0.025 4.025 5 O -0.310 6.310 6 C -0.045 4.045 7 C 0.038 3.962 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.040 3.960 11 C -0.397 4.397 12 H 0.090 0.910 13 C -0.245 4.245 14 N -0.585 5.585 15 Si 0.800 3.200 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.193 1.193 19 H 0.065 0.935 20 H 0.092 0.908 21 H 0.078 0.922 22 H 0.131 0.869 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.018 0.982 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.240 -1.784 -7.069 9.596 hybrid contribution 0.425 0.400 1.266 1.394 sum -5.815 -1.384 -5.802 8.331 Atomic orbital electron populations 1.21665 0.92747 1.02051 1.01937 1.22986 0.97962 0.99909 0.95625 0.91065 1.23540 1.00279 0.82174 0.96487 1.89007 1.83250 1.27284 1.31424 1.23901 0.97103 0.99942 0.83571 1.21959 0.92591 0.89664 0.91980 0.91028 1.44109 1.25809 1.54325 1.08910 1.20502 0.87384 0.96466 0.91674 1.19568 0.92633 1.42054 0.85491 0.91025 1.25940 0.95180 1.01244 1.02095 1.70265 1.00718 1.53544 1.33988 0.85201 0.77508 0.77145 0.80183 1.21147 1.22030 1.19340 0.93505 0.90786 0.92156 0.86862 0.92796 0.93652 0.89435 0.98189 0.95628 0.96188 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.94 71.98 0.64 -2.87 15 2 C -0.14 -4.87 2.86 -9.78 -0.03 -4.90 15 3 H 0.07 2.62 7.22 -2.39 -0.02 2.60 15 4 C 0.05 1.56 7.18 72.49 0.52 2.08 15 5 O -0.39 -13.88 11.65 -148.98 -1.74 -15.62 15 6 C 0.03 1.31 7.24 72.49 0.52 1.83 15 7 C 0.15 6.04 3.25 46.01 0.15 6.19 15 8 H 0.07 2.98 7.53 -2.38 -0.02 2.96 15 9 N -0.61 -30.68 2.86 -697.09 -2.00 -32.68 15 10 C 0.18 9.29 7.33 127.77 0.94 10.23 15 11 C -0.27 -14.71 9.61 84.04 0.81 -13.90 15 12 H 0.07 3.81 7.83 -2.91 -0.02 3.79 15 13 C -0.05 -2.78 5.38 84.86 0.46 -2.33 15 14 N -0.94 -55.41 10.13 21.65 0.22 -55.20 15 15 Si 0.97 44.89 29.56 68.60 2.03 46.91 15 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 17 H -0.29 -13.63 7.11 99.48 0.71 -12.92 15 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 19 H 0.05 1.38 8.14 -2.38 -0.02 1.36 15 20 H 0.07 1.65 8.14 -2.38 -0.02 1.64 15 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 22 H 0.11 2.69 7.87 -2.39 -0.02 2.67 15 23 H 0.05 1.60 8.14 -2.39 -0.02 1.59 15 24 H 0.05 1.91 6.92 -2.39 -0.02 1.90 15 25 H 0.09 3.27 8.14 -2.39 -0.02 3.25 15 26 H 0.00 -0.01 7.38 -2.39 -0.02 -0.03 15 27 H 0.02 1.40 7.03 -2.39 -0.02 1.38 15 28 H 0.02 0.87 7.06 -2.38 -0.02 0.85 15 29 H 0.25 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -61.14 235.17 3.63 -57.51 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.11 Total: 2.72 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.01 Total: -3.65 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.78 Total: -87.87 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -1.74 Total: -15.62 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -61.14 3.63 -57.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688198251.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.925 kcal (2) G-P(sol) polarization free energy of solvation -61.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds