Wall clock time and date at job start Mon Mar 30 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.83158 * 2 1 4 4 C 1.55227 * 111.01731 * 123.71353 * 2 1 3 5 5 O 1.44383 * 103.55830 * 155.07043 * 4 2 1 6 6 C 1.43741 * 106.97990 * 320.00766 * 5 4 2 7 7 C 1.54105 * 107.29220 * 26.51631 * 6 5 4 8 8 H 1.08992 * 110.48990 * 239.15885 * 7 6 5 9 9 N 1.46499 * 110.48546 * 116.64267 * 7 6 5 10 10 C 1.46496 * 120.00246 * 303.24840 * 9 7 6 11 11 C 1.36936 * 119.99835 * 123.24621 * 9 7 6 12 12 H 1.08009 * 120.00078 * 336.63454 * 11 9 7 13 13 C 1.38813 * 119.99882 * 156.62732 * 11 9 7 14 14 N 1.31614 * 120.00313 * 331.02891 * 13 11 9 15 15 Si 1.86807 * 119.99711 * 151.02734 * 13 11 9 16 16 H 1.48493 * 109.46978 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47094 * 300.00092 * 15 13 11 18 18 H 1.48503 * 109.47197 * 59.99737 * 15 13 11 19 19 H 1.08991 * 109.47612 * 183.64231 * 1 2 3 20 20 H 1.09005 * 109.47151 * 303.64904 * 1 2 3 21 21 H 1.09007 * 109.46774 * 63.64146 * 1 2 3 22 22 H 1.08997 * 110.51941 * 36.58131 * 4 2 1 23 23 H 1.08997 * 110.77738 * 273.68554 * 4 2 1 24 24 H 1.08998 * 109.88095 * 267.09537 * 6 5 4 25 25 H 1.08999 * 110.00536 * 146.01067 * 6 5 4 26 26 H 1.09001 * 109.47066 * 272.70880 * 10 9 7 27 27 H 1.09000 * 109.47494 * 32.71075 * 10 9 7 28 28 H 1.08998 * 109.47352 * 152.71428 * 10 9 7 29 29 H 0.96997 * 120.00004 * 354.18041 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0868 -0.8043 1.2053 5 8 3.3963 -1.2184 0.7600 6 6 3.2712 -1.5909 -0.6226 7 6 2.0823 -0.8013 -1.2040 8 1 1.3238 -1.4825 -1.5893 9 7 2.5373 0.1074 -2.2593 10 6 3.5713 1.1045 -1.9718 11 6 1.9960 0.0246 -3.5144 12 1 1.5409 -0.8968 -3.8465 13 6 2.0322 1.1250 -4.3598 14 7 2.0328 2.3414 -3.8571 15 14 2.0801 0.8794 -6.2110 16 1 2.1148 2.2021 -6.8850 17 1 3.2940 0.1061 -6.5765 18 1 0.8701 0.1347 -6.6430 19 1 -0.3634 -1.0255 0.0653 20 1 -0.3634 0.5695 0.8555 21 1 -0.3633 0.4563 -0.9209 22 1 1.4586 -1.6714 1.4089 23 1 2.1643 -0.1717 2.0895 24 1 3.0798 -2.6610 -0.7024 25 1 4.1840 -1.3366 -1.1614 26 1 3.1047 2.0110 -1.5862 27 1 4.2626 0.7073 -1.2285 28 1 4.1160 1.3373 -2.8868 29 1 1.9230 2.4716 -2.9022 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688198262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:34 Heat of formation + Delta-G solvation = -30.269063 kcal Electronic energy + Delta-G solvation = -12031.017646 eV Core-core repulsion = 9954.748732 eV Total energy + Delta-G solvation = -2076.268915 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.10942 -35.37709 -32.72864 -30.88168 -27.83269 -26.07972 -25.75279 -22.83541 -21.03734 -19.21279 -17.50671 -15.95628 -15.25676 -14.71111 -14.06086 -13.69203 -13.38477 -12.92780 -12.67529 -12.26949 -11.73623 -11.17341 -10.88048 -10.77735 -10.57600 -10.51007 -10.34310 -10.10280 -10.00498 -9.44958 -9.23238 -8.33685 -6.94088 -6.08108 -3.21103 3.49308 3.53733 3.71371 4.42728 4.58514 5.12199 5.23818 5.33398 5.52777 5.55866 5.73352 5.84272 5.91510 6.08608 6.11878 6.25741 6.39699 6.51791 6.59531 6.69052 6.81402 6.91572 7.14321 7.36807 7.96891 8.55505 9.10148 9.84206 10.23646 11.19454 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.059567 B = 0.012560 C = 0.011938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.946756 B = 2228.727056 C = 2344.858340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.147 4.147 3 H 0.083 0.917 4 C 0.050 3.950 5 O -0.387 6.387 6 C 0.028 3.972 7 C 0.153 3.847 8 H 0.076 0.924 9 N -0.590 5.590 10 C 0.133 3.867 11 C -0.362 4.362 12 H 0.058 0.942 13 C -0.020 4.020 14 N -0.910 5.910 15 Si 1.061 2.939 16 H -0.286 1.286 17 H -0.293 1.293 18 H -0.293 1.293 19 H 0.048 0.952 20 H 0.046 0.954 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.010 0.990 27 H 0.021 0.979 28 H 0.051 0.949 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -5.129 6.440 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 H 0.101 0.899 4 C -0.027 4.027 5 O -0.306 6.306 6 C -0.051 4.051 7 C 0.044 3.956 8 H 0.095 0.905 9 N -0.312 5.312 10 C -0.012 4.012 11 C -0.490 4.490 12 H 0.076 0.924 13 C -0.223 4.223 14 N -0.549 5.549 15 Si 0.891 3.109 16 H -0.211 1.211 17 H -0.221 1.221 18 H -0.220 1.220 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.464 -4.327 5.056 6.671 hybrid contribution -0.408 -0.799 1.364 1.633 sum -0.872 -5.126 6.421 8.262 Atomic orbital electron populations 1.21570 0.94545 1.00891 1.01771 1.23295 0.96342 1.01147 0.96046 0.89899 1.23565 0.84676 0.97145 0.97287 1.88783 1.29209 1.86405 1.26188 1.23847 1.01610 0.97847 0.81787 1.21789 0.93321 0.91970 0.88556 0.90550 1.43994 1.41339 1.38567 1.07331 1.20940 0.90347 0.91259 0.98677 1.19959 1.40596 0.98237 0.90235 0.92388 1.25772 0.98947 0.92002 1.05561 1.70781 1.46997 1.21539 1.15629 0.83590 0.76234 0.75375 0.75728 1.21136 1.22073 1.22009 0.93273 0.93524 0.91772 0.92955 0.90075 0.93390 0.89603 0.97207 0.96057 0.92984 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.20 37.16 0.34 -1.82 15 2 C -0.15 -2.74 3.32 -88.48 -0.29 -3.04 15 3 H 0.08 1.72 6.93 -51.93 -0.36 1.36 15 4 C 0.05 0.82 7.19 38.34 0.28 1.09 15 5 O -0.39 -7.34 11.52 -35.23 -0.41 -7.74 15 6 C 0.03 0.53 6.85 37.73 0.26 0.79 15 7 C 0.15 3.23 3.12 -66.40 -0.21 3.02 15 8 H 0.08 1.62 7.64 -51.93 -0.40 1.22 15 9 N -0.59 -14.83 2.73 -171.74 -0.47 -15.30 15 10 C 0.13 3.25 7.77 59.84 0.46 3.71 15 11 C -0.36 -10.06 9.42 -15.06 -0.14 -10.20 15 12 H 0.06 1.61 7.96 -52.48 -0.42 1.20 15 13 C -0.02 -0.56 4.63 -17.43 -0.08 -0.64 15 14 N -0.91 -27.30 12.71 55.49 0.71 -26.59 15 15 Si 1.06 25.23 30.01 -169.99 -5.10 20.13 15 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 17 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 19 H 0.05 0.73 8.09 -51.93 -0.42 0.31 15 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.06 1.22 8.14 -51.92 -0.42 0.80 15 22 H 0.05 0.76 8.01 -51.93 -0.42 0.34 15 23 H 0.08 1.17 8.14 -51.93 -0.42 0.74 15 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.09 1.74 6.91 -51.93 -0.36 1.38 15 26 H 0.01 0.25 6.48 -51.93 -0.34 -0.09 15 27 H 0.02 0.47 6.74 -51.93 -0.35 0.12 15 28 H 0.05 1.36 7.25 -51.93 -0.38 0.99 15 29 H 0.27 8.16 6.31 -40.82 -0.26 7.91 15 LS Contribution 234.65 15.07 3.54 3.54 Total: -1.00 -29.96 234.65 -5.29 -35.25 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.18 Total: -2.19 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 0.62 Total: -7.09 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.24 Total: -41.89 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.41 Total: -7.74 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.10 Total: 20.13 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -29.96 -5.29 -35.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688198262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.978 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds