Wall clock time and date at job start Mon Mar 30 2020 20:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48497 * 109.47040 * 269.99837 * 3 2 1 5 5 H 1.48502 * 109.47215 * 29.99774 * 3 2 1 6 6 H 1.48502 * 109.47242 * 150.00022 * 3 2 1 7 7 C 1.38926 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36997 * 120.00257 * 0.02562 * 7 2 1 10 10 N 1.39885 * 125.49151 * 0.25646 * 9 7 2 11 11 C 1.30466 * 110.09352 * 180.17365 * 10 9 7 12 12 C 1.46087 * 107.86211 * 359.61392 * 11 10 9 13 13 C 1.39837 * 133.92412 * 180.26361 * 12 11 10 14 14 C 1.36605 * 119.77421 * 179.97438 * 13 12 11 15 15 C 1.38852 * 120.60924 * 359.97438 * 14 13 12 16 16 C 1.37838 * 120.64162 * 0.02681 * 15 14 13 17 17 C 1.37660 * 125.50363 * 180.02562 * 9 7 2 18 18 H 0.97002 * 120.00610 * 0.02562 * 1 2 3 19 19 H 1.08002 * 126.07048 * 179.88336 * 11 10 9 20 20 H 1.07996 * 120.10951 * 359.97438 * 13 12 11 21 21 H 1.08007 * 119.69716 * 180.02562 * 14 13 12 22 22 H 1.07996 * 119.68513 * 180.02562 * 15 14 13 23 23 H 1.07994 * 120.12694 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5452 1.4403 0.7000 7 6 2.0084 -1.2031 0.0005 8 1 3.0883 -1.2031 0.0010 9 7 1.3235 -2.3896 0.0005 10 7 -0.0689 -2.5236 -0.0051 11 6 -0.3977 -3.7862 0.0003 12 6 0.8350 -4.5702 0.0009 13 6 1.1129 -5.9407 0.0009 14 6 2.4098 -6.3698 0.0010 15 6 3.4565 -5.4574 0.0005 16 6 3.2067 -4.1018 0.0005 17 6 1.8944 -3.6422 0.0015 18 1 -0.4851 0.8400 -0.0004 19 1 -1.4027 -4.1815 -0.0003 20 1 0.3050 -6.6573 0.0008 21 1 2.6231 -7.4286 0.0005 22 1 4.4761 -5.8131 0.0002 23 1 4.0270 -3.3995 -0.0002 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038995708.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:03 Heat of formation + Delta-G solvation = 69.358743 kcal Electronic energy + Delta-G solvation = -10782.633731 eV Core-core repulsion = 8789.423437 eV Total energy + Delta-G solvation = -1993.210293 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59730 -37.73073 -35.31967 -33.03633 -30.58745 -30.14299 -26.90028 -23.54780 -22.46437 -22.32723 -19.21344 -17.85885 -17.07907 -16.28639 -15.71737 -15.53480 -15.02537 -14.65998 -13.94819 -13.56559 -13.04912 -12.87455 -12.49706 -12.46540 -12.12855 -11.57637 -11.42424 -10.94418 -10.62607 -9.20947 -8.92461 -8.48082 -6.12666 0.41372 0.93274 1.34942 1.44141 1.52018 2.07641 2.08830 2.62125 2.94089 3.28525 4.11070 4.17149 4.37365 4.39979 4.67872 4.81353 5.04899 5.14642 5.36353 5.41421 5.76158 5.82619 5.87612 6.10228 6.41662 6.68398 7.39762 7.55989 8.52902 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.063167 B = 0.012581 C = 0.010530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.164364 B = 2224.991639 C = 2658.313825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C -0.008 4.008 3 Si 1.014 2.986 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.356 4.356 8 H 0.124 0.876 9 N -0.218 5.218 10 N -0.255 5.255 11 C -0.045 4.045 12 C -0.219 4.219 13 C -0.052 4.052 14 C -0.179 4.179 15 C -0.095 4.095 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.276 0.724 19 H 0.201 0.799 20 H 0.142 0.858 21 H 0.153 0.847 22 H 0.152 0.848 23 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 -6.278 0.022 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.217 4.217 3 Si 0.833 3.167 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.485 4.485 8 H 0.141 0.859 9 N 0.009 4.991 10 N -0.076 5.076 11 C -0.231 4.231 12 C -0.229 4.229 13 C -0.072 4.072 14 C -0.199 4.199 15 C -0.116 4.116 16 C -0.169 4.169 17 C -0.099 4.099 18 H 0.085 0.915 19 H 0.218 0.782 20 H 0.160 0.840 21 H 0.170 0.830 22 H 0.170 0.830 23 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.265 -4.803 0.022 6.423 hybrid contribution 0.216 0.240 -0.012 0.323 sum 4.482 -4.563 0.010 6.396 Atomic orbital electron populations 1.70356 1.07922 1.28836 1.39330 1.26691 0.96635 1.03713 0.94671 0.84660 0.78209 0.74550 0.79233 1.18899 1.19628 1.17458 1.20279 0.92500 0.81526 1.54223 0.85891 1.44775 1.02074 1.03852 1.48356 1.77395 0.92165 1.18653 1.19378 1.25432 0.98957 0.90264 1.08424 1.20087 0.91854 0.95202 1.15765 1.20523 0.98083 0.91686 0.96939 1.20829 0.91701 1.00439 1.06973 1.21140 1.00504 0.90815 0.99115 1.20189 0.92032 0.97019 1.07628 1.19498 0.96344 0.85934 1.08172 0.91483 0.78240 0.84038 0.82982 0.83032 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.69 11.76 21.65 0.25 -48.43 14 2 C -0.01 -0.42 5.50 84.93 0.47 0.05 14 3 Si 1.01 40.63 29.55 68.60 2.03 42.66 14 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 14 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 14 6 H -0.25 -9.38 7.11 99.48 0.71 -8.67 14 7 C -0.36 -20.21 10.14 84.05 0.85 -19.36 14 8 H 0.12 6.40 7.79 -2.91 -0.02 6.38 14 9 N -0.22 -12.78 3.74 -183.97 -0.69 -13.46 14 10 N -0.25 -14.98 10.18 -52.86 -0.54 -15.52 14 11 C -0.04 -2.21 12.29 86.93 1.07 -1.14 14 12 C -0.22 -10.26 6.36 -20.22 -0.13 -10.38 14 13 C -0.05 -1.88 10.06 22.27 0.22 -1.66 14 14 C -0.18 -5.63 9.97 22.03 0.22 -5.41 14 15 C -0.09 -3.17 10.02 22.32 0.22 -2.95 14 16 C -0.15 -6.25 9.98 22.37 0.22 -6.03 14 17 C 0.02 1.06 6.81 39.06 0.27 1.33 14 18 H 0.28 14.71 8.31 -92.71 -0.77 13.94 14 19 H 0.20 7.96 8.06 -2.91 -0.02 7.93 14 20 H 0.14 4.05 8.06 -2.91 -0.02 4.02 14 21 H 0.15 3.43 8.06 -2.91 -0.02 3.41 14 22 H 0.15 3.76 8.06 -2.91 -0.02 3.73 14 23 H 0.11 4.56 8.01 -2.91 -0.02 4.54 14 Total: -1.00 -70.00 214.02 5.68 -64.31 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.21 Total: 16.00 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 3.42 Total: -45.56 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -0.97 Total: -77.41 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -70.00 5.68 -64.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038995708.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.672 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds