Wall clock time and date at job start Mon Mar 30 2020 20:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 O 1.42896 * 109.47397 * 240.00035 * 2 1 3 5 5 C 1.50703 * 109.47336 * 119.99861 * 2 1 3 6 6 C 1.37637 * 120.12671 * 95.02520 * 5 2 1 7 7 C 1.38610 * 120.24496 * 179.97438 * 6 5 2 8 8 C 1.38659 * 120.50438 * 359.97438 * 7 6 5 9 9 C 1.37596 * 120.24927 * 0.02562 * 8 7 6 10 10 C 1.40701 * 120.12513 * 275.00409 * 5 2 1 11 11 C 1.41391 * 120.24447 * 359.97438 * 10 5 2 12 12 H 1.07997 * 120.00206 * 329.51511 * 11 10 5 13 13 C 1.39946 * 119.99846 * 149.51995 * 11 10 5 14 14 N 1.30824 * 120.00005 * 162.30241 * 13 11 10 15 15 Si 1.86800 * 120.00269 * 342.30600 * 13 11 10 16 16 H 1.48506 * 109.47109 * 95.37311 * 15 13 11 17 17 H 1.48500 * 109.47359 * 215.37709 * 15 13 11 18 18 H 1.48506 * 109.46751 * 335.37780 * 15 13 11 19 19 H 1.08996 * 109.47508 * 299.99923 * 1 2 3 20 20 H 1.08999 * 109.47255 * 59.99985 * 1 2 3 21 21 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 22 22 H 0.96703 * 114.00147 * 299.99865 * 4 2 1 23 23 H 1.07996 * 119.87903 * 359.97438 * 6 5 2 24 24 H 1.08000 * 119.74959 * 180.02562 * 7 6 5 25 25 H 1.07996 * 119.87223 * 180.27887 * 8 7 6 26 26 H 1.07998 * 120.12723 * 180.02562 * 9 8 7 27 27 H 0.97006 * 120.00369 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 2.3609 -2.0456 1.1715 7 6 2.8238 -2.7013 2.3016 8 6 2.9617 -2.0220 3.5025 9 6 2.6392 -0.6869 3.5847 10 6 2.1677 -0.0110 2.4439 11 6 1.8341 1.3611 2.5160 12 1 1.9517 1.9919 1.6474 13 6 1.3515 1.9018 3.7132 14 7 1.3691 3.1965 3.9002 15 14 0.6823 0.7749 5.0443 16 1 1.7538 0.4827 6.0303 17 1 -0.4541 1.4400 5.7308 18 1 0.2155 -0.4940 4.4300 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7210 -1.5952 -1.2329 23 1 2.2578 -2.5845 0.2413 24 1 3.0797 -3.7491 2.2462 25 1 3.3275 -2.5418 4.3756 26 1 2.7478 -0.1597 4.5209 27 1 1.0342 3.5713 4.7299 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259426778.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:22:45 Heat of formation + Delta-G solvation = -45.102089 kcal Electronic energy + Delta-G solvation = -11872.417115 eV Core-core repulsion = 9787.327719 eV Total energy + Delta-G solvation = -2085.089396 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.50242 -36.03970 -33.64219 -31.24599 -30.16555 -28.38817 -25.19287 -22.84410 -21.17712 -19.73400 -17.51472 -16.51666 -15.33570 -14.81678 -14.28933 -13.85871 -13.21157 -12.96552 -12.80195 -12.28916 -11.94866 -11.44578 -11.21711 -11.00144 -10.83631 -10.53728 -10.39266 -9.80394 -9.75508 -9.22588 -9.08746 -7.66094 -7.59032 -6.96939 -4.52108 2.53583 2.63563 3.08738 3.18305 3.29167 3.95543 4.47057 5.08060 5.35258 5.70742 5.88573 6.02585 6.03451 6.10548 6.32301 6.46534 6.64446 6.77104 6.80519 6.92571 7.15394 7.37399 7.61543 7.68033 7.80817 8.06554 8.27385 8.31823 8.61326 8.76964 10.05136 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.034190 B = 0.017481 C = 0.013063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.767695 B = 1601.371390 C = 2142.917068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.160 3.840 3 H 0.103 0.897 4 O -0.571 6.571 5 C -0.210 4.210 6 C -0.076 4.076 7 C -0.241 4.241 8 C -0.082 4.082 9 C -0.234 4.234 10 C 0.101 3.899 11 C -0.450 4.450 12 H 0.094 0.906 13 C 0.086 3.914 14 N -0.808 5.808 15 Si 0.909 3.091 16 H -0.271 1.271 17 H -0.291 1.291 18 H -0.245 1.245 19 H 0.074 0.926 20 H 0.049 0.951 21 H 0.047 0.953 22 H 0.363 0.637 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 -5.844 -1.654 6.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.121 0.879 4 O -0.377 6.377 5 C -0.211 4.211 6 C -0.095 4.095 7 C -0.260 4.260 8 C -0.100 4.100 9 C -0.254 4.254 10 C 0.098 3.902 11 C -0.479 4.479 12 H 0.111 0.889 13 C -0.133 4.133 14 N -0.432 5.432 15 Si 0.736 3.264 16 H -0.197 1.197 17 H -0.218 1.218 18 H -0.168 1.168 19 H 0.093 0.907 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.210 0.790 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.758 -4.974 -1.649 5.527 hybrid contribution -0.510 -0.873 0.994 1.418 sum -2.268 -5.847 -0.655 6.305 Atomic orbital electron populations 1.22356 0.96900 1.01334 1.02228 1.20507 0.92050 0.95791 0.81406 0.87902 1.86548 1.77806 1.28352 1.44995 1.20272 1.10339 0.93975 0.96531 1.20330 0.98569 0.94031 0.96521 1.20358 1.13219 0.98486 0.93954 1.20626 0.98548 0.94456 0.96369 1.21042 1.10147 0.95248 0.98924 1.17498 0.89204 0.92865 0.90593 1.19457 1.37627 0.92514 0.98274 0.88850 1.26112 0.93271 0.95331 0.98585 1.69693 1.34308 1.12958 1.26290 0.86350 0.78441 0.81554 0.80104 1.19724 1.21840 1.16803 0.90671 0.93173 0.93414 0.79036 0.88859 0.88918 0.88912 0.88184 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.52 37.15 0.35 -2.76 15 2 C 0.16 3.29 3.36 -27.88 -0.09 3.20 15 3 H 0.10 2.28 6.53 -51.93 -0.34 1.95 15 4 O -0.57 -10.77 12.99 -35.23 -0.46 -11.23 15 5 C -0.21 -4.77 5.12 -103.91 -0.53 -5.30 15 6 C -0.08 -1.59 9.29 -39.66 -0.37 -1.96 15 7 C -0.24 -5.02 10.05 -39.29 -0.39 -5.42 15 8 C -0.08 -1.79 10.02 -39.66 -0.40 -2.19 15 9 C -0.23 -5.68 7.16 -38.87 -0.28 -5.96 15 10 C 0.10 2.54 5.09 -106.82 -0.54 1.99 15 11 C -0.45 -11.83 8.74 -37.74 -0.33 -12.16 15 12 H 0.09 2.55 6.64 -52.49 -0.35 2.21 15 13 C 0.09 2.21 5.41 -17.34 -0.09 2.12 15 14 N -0.81 -21.25 13.93 55.55 0.77 -20.47 15 15 Si 0.91 20.64 24.52 -169.99 -4.17 16.47 15 16 H -0.27 -6.03 6.72 56.52 0.38 -5.65 15 17 H -0.29 -6.37 7.11 56.52 0.40 -5.96 15 18 H -0.24 -5.71 6.86 56.52 0.39 -5.32 15 19 H 0.07 1.49 7.97 -51.93 -0.41 1.07 15 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.36 5.49 7.33 45.56 0.33 5.82 15 23 H 0.09 1.64 6.40 -52.49 -0.34 1.31 15 24 H 0.09 1.68 8.06 -52.49 -0.42 1.26 15 25 H 0.09 1.77 8.06 -52.49 -0.42 1.35 15 26 H 0.10 2.42 4.79 -52.49 -0.25 2.17 15 27 H 0.28 6.81 8.30 -40.82 -0.34 6.47 15 LS Contribution 226.25 15.07 3.41 3.41 Total: -1.00 -27.49 226.25 -5.34 -32.83 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -2.22 Total: 7.43 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -2.68 Total: -28.43 kcal Atomic # 7 Polarization: -21.25 SS G_CDS: 0.77 Total: -20.47 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.46 Total: -11.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.17 Total: 16.47 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -27.49 -5.34 -32.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259426778.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.277 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds