Wall clock time and date at job start Mon Mar 30 2020 20:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86801 * 119.99432 * 2 1 4 4 H 1.48497 * 109.47230 * 271.93991 * 3 2 1 5 5 H 1.48498 * 109.47341 * 31.94225 * 3 2 1 6 6 H 1.48507 * 109.46929 * 151.94041 * 3 2 1 7 7 C 1.40062 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99922 * 343.57886 * 7 2 1 9 9 C 1.39950 * 119.99954 * 163.58339 * 7 2 1 10 10 C 1.39926 * 126.38009 * 341.23347 * 9 7 2 11 11 C 1.39488 * 107.11360 * 180.14344 * 10 9 7 12 12 C 1.35396 * 108.06445 * 359.77693 * 11 10 9 13 13 N 1.36891 * 109.00371 * 0.11793 * 12 11 10 14 14 C 1.46771 * 123.46687 * 179.78703 * 13 12 11 15 15 C 1.53365 * 108.21440 * 343.51593 * 14 13 12 16 16 N 1.46952 * 109.72457 * 50.07749 * 15 14 13 17 17 C 1.47319 * 111.18079 * 288.71584 * 16 15 14 18 18 H 0.96993 * 120.00356 * 359.97438 * 1 2 3 19 19 H 1.07991 * 126.44816 * 359.92825 * 10 9 7 20 20 H 1.08004 * 125.96089 * 179.79693 * 11 10 9 21 21 H 1.08988 * 109.71580 * 103.20159 * 14 13 12 22 22 H 1.09002 * 109.70720 * 223.84162 * 14 13 12 23 23 H 1.09000 * 109.42639 * 170.16191 * 15 14 13 24 24 H 1.09005 * 109.42795 * 290.00309 * 15 14 13 25 25 H 1.00906 * 111.00234 * 164.62573 * 16 15 14 26 26 H 1.09002 * 109.74897 * 169.93193 * 17 16 15 27 27 H 1.09005 * 109.74408 * 290.60602 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4489 2.0702 -1.3992 5 1 1.4611 2.6405 0.7407 6 1 3.5601 1.4288 0.6586 7 6 2.0090 -1.2129 -0.0005 8 1 1.5021 -2.1293 0.2635 9 6 3.3657 -1.2374 -0.3431 10 6 4.0627 -0.2472 -1.0442 11 6 5.3824 -0.6822 -1.1659 12 6 5.4849 -1.8877 -0.5580 13 7 4.2619 -2.2370 -0.0518 14 6 4.0125 -3.4910 0.6690 15 6 5.1756 -4.4484 0.3821 16 7 6.4532 -3.7615 0.6178 17 6 6.7156 -2.7535 -0.4240 18 1 -0.4850 0.8400 0.0004 19 1 3.6549 0.6782 -1.4231 20 1 6.1827 -0.1502 -1.6587 21 1 3.9536 -3.2943 1.7394 22 1 3.0781 -3.9337 0.3240 23 1 5.1029 -5.3146 1.0397 24 1 5.1269 -4.7772 -0.6561 25 1 7.2129 -4.4225 0.6811 26 1 7.5686 -2.1392 -0.1356 27 1 6.9230 -3.2494 -1.3723 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259760212.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:05 Heat of formation + Delta-G solvation = 23.755313 kcal Electronic energy + Delta-G solvation = -11928.686642 eV Core-core repulsion = 9878.875878 eV Total energy + Delta-G solvation = -2049.810763 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.68261 -37.37420 -35.28651 -33.58443 -31.18424 -29.41272 -27.22743 -24.43467 -22.86223 -21.95476 -19.26660 -18.93132 -17.55613 -16.81958 -16.33590 -15.93398 -15.42788 -15.04743 -14.44342 -14.02143 -13.93867 -13.50409 -13.20503 -12.80642 -12.49450 -12.24023 -12.15927 -11.83310 -11.47953 -11.08489 -9.60536 -9.13627 -8.85183 -8.81317 -6.28548 1.19282 1.32685 1.52786 1.71802 2.20663 2.29034 2.43709 3.19837 3.25822 3.83980 4.10964 4.21680 4.31878 4.54485 4.63459 4.75989 4.86874 4.89543 4.97716 5.16167 5.52652 5.65858 5.78584 5.95878 6.27017 6.47478 6.58821 6.79420 7.01020 7.23134 8.26277 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056254 B = 0.013460 C = 0.011374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.620600 B = 2079.727508 C = 2461.195404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.059 3.941 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.055 0.945 9 C 0.194 3.806 10 C -0.376 4.376 11 C -0.175 4.175 12 C -0.076 4.076 13 N -0.475 5.475 14 C 0.114 3.886 15 C 0.060 3.940 16 N -0.695 5.695 17 C 0.148 3.852 18 H 0.292 0.708 19 H 0.105 0.895 20 H 0.136 0.864 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.123 0.877 24 H 0.038 0.962 25 H 0.365 0.635 26 H 0.099 0.901 27 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.891 -5.965 0.618 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.155 4.155 3 Si 0.804 3.196 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.399 4.399 11 C -0.200 4.200 12 C -0.182 4.182 13 N -0.158 5.158 14 C -0.008 4.008 15 C -0.070 4.070 16 N -0.329 5.329 17 C 0.018 3.982 18 H 0.102 0.898 19 H 0.123 0.877 20 H 0.153 0.847 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.141 0.859 24 H 0.056 0.944 25 H 0.186 0.814 26 H 0.117 0.883 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.364 -5.775 1.244 11.929 hybrid contribution -0.268 0.272 -0.836 0.919 sum 10.096 -5.503 0.408 11.506 Atomic orbital electron populations 1.69666 1.08659 1.31074 1.39559 1.26395 0.95258 1.03439 0.90425 0.85345 0.78787 0.76581 0.78895 1.19544 1.21110 1.18333 1.18217 0.91788 0.95678 1.46066 0.92634 1.18068 0.89673 0.88013 0.96113 1.20873 0.96620 1.03083 1.19311 1.20129 0.96493 0.96497 1.06868 1.20588 0.87635 0.99304 1.10706 1.44246 1.07788 1.17310 1.46431 1.21907 0.99340 0.83111 0.96451 1.22135 0.88479 0.95556 1.00854 1.60238 1.05058 1.18961 1.48674 1.20483 0.92806 0.91866 0.92996 0.89779 0.87738 0.84657 0.91476 0.91056 0.85934 0.94407 0.81390 0.88257 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.62 13.93 21.86 0.30 -49.31 15 2 C 0.06 3.37 5.50 85.28 0.47 3.84 15 3 Si 0.98 47.72 24.52 68.60 1.68 49.40 15 4 H -0.27 -12.77 6.69 99.48 0.67 -12.11 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.26 -13.19 6.55 99.48 0.65 -12.54 15 7 C -0.48 -28.64 9.61 23.13 0.22 -28.42 15 8 H 0.06 3.44 8.04 -2.91 -0.02 3.42 15 9 C 0.19 10.75 6.28 39.10 0.25 10.99 15 10 C -0.38 -20.13 8.15 22.98 0.19 -19.94 15 11 C -0.17 -8.10 10.74 21.91 0.24 -7.87 15 12 C -0.08 -3.29 6.67 41.23 0.27 -3.01 15 13 N -0.47 -22.63 3.19 -498.95 -1.59 -24.22 15 14 C 0.11 4.34 6.97 86.45 0.60 4.94 15 15 C 0.06 1.62 6.54 86.42 0.56 2.18 15 16 N -0.70 -18.55 6.85 -515.47 -3.53 -22.09 15 17 C 0.15 4.50 6.95 85.60 0.59 5.09 15 18 H 0.29 15.20 8.30 -92.71 -0.77 14.43 15 19 H 0.11 5.59 4.25 -2.92 -0.01 5.57 15 20 H 0.14 5.33 8.06 -2.91 -0.02 5.31 15 21 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.07 2.74 8.13 -2.39 -0.02 2.72 15 23 H 0.12 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.04 1.04 8.07 -2.38 -0.02 1.02 15 25 H 0.37 6.74 8.90 -89.69 -0.80 5.94 15 26 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 27 H 0.05 1.35 8.14 -2.38 -0.02 1.34 15 Total: -1.00 -68.40 222.56 0.54 -67.86 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.28 Total: 10.56 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.40 Total: -32.20 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -4.82 Total: -95.62 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.68 Total: 49.40 kcal Total: -68.40 0.54 -67.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259760212.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.613 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds