Wall clock time and date at job start Mon Mar 30 2020 20:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 N 1.40192 * 126.60444 * 2 1 4 4 N 1.28657 * 109.18229 * 179.97438 * 3 2 1 5 5 C 1.34864 * 109.97200 * 359.97438 * 4 3 2 6 6 C 1.40872 * 144.88899 * 180.02562 * 5 4 3 7 7 C 1.39182 * 107.34244 * 179.97438 * 6 5 4 8 8 C 1.39956 * 125.90754 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00293 * 180.29902 * 8 7 6 10 10 C 1.40045 * 119.99947 * 0.02927 * 8 7 6 11 11 N 1.30869 * 119.99805 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99824 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46986 * 90.00166 * 12 10 8 14 14 H 1.48496 * 109.47029 * 210.00182 * 12 10 8 15 15 H 1.48499 * 109.47352 * 330.00012 * 12 10 8 16 16 N 1.38445 * 108.18252 * 0.26432 * 7 6 5 17 17 H 0.97005 * 125.58829 * 179.72976 * 16 7 6 18 18 C 1.36286 * 126.60656 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.46405 * 90.03189 * 1 2 3 20 20 H 1.08996 * 109.46866 * 210.02675 * 1 2 3 21 21 H 1.08998 * 109.46935 * 330.03844 * 1 2 3 22 22 H 1.07997 * 126.32704 * 359.97438 * 6 5 4 23 23 H 0.97001 * 120.00045 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3010 1.1254 0.0000 4 7 3.5286 0.7402 0.0005 5 6 3.5886 -0.6071 0.0015 6 6 4.4493 -1.7223 0.0028 7 6 3.6510 -2.8625 0.0036 8 6 4.1089 -4.1850 0.0045 9 1 3.4017 -5.0013 0.0003 10 6 5.4841 -4.4499 0.0053 11 7 6.3409 -3.4608 0.0056 12 14 6.0951 -6.2152 0.0072 13 1 6.2576 -6.6842 -1.3924 14 1 7.4026 -6.2856 0.7078 15 1 5.1111 -7.0789 0.7077 16 7 2.3258 -2.4620 -0.0032 17 1 1.5572 -3.0538 -0.0080 18 6 2.2778 -1.0940 0.0005 19 1 -0.3632 -0.0006 -1.0278 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8903 0.5132 22 1 5.5290 -1.6972 0.0031 23 1 7.2934 -3.6442 0.0058 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783422.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:12 Heat of formation + Delta-G solvation = 110.163856 kcal Electronic energy + Delta-G solvation = -11391.751454 eV Core-core repulsion = 9242.147302 eV Total energy + Delta-G solvation = -2149.604151 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.81069 -39.26003 -35.44987 -35.00304 -30.77092 -30.30074 -28.12552 -26.89040 -22.96345 -21.85517 -21.15088 -19.13366 -18.09753 -17.32485 -16.88263 -15.99966 -14.97548 -14.39992 -14.38425 -13.94279 -13.61814 -13.52921 -12.92403 -12.80433 -12.58080 -12.13942 -11.78216 -11.36255 -11.35016 -10.84861 -9.24177 -8.65672 -8.44232 -6.30681 0.65104 1.10529 1.33284 1.50230 1.65003 1.79079 2.25661 2.57440 2.74534 3.40107 3.82906 3.88086 4.37770 4.46692 4.58586 4.95296 5.07142 5.20570 5.70156 5.91584 6.07798 6.15836 6.56391 6.78240 7.02877 7.28490 7.61344 8.44112 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.081887 B = 0.010292 C = 0.009189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.852710 B = 2719.802751 C = 3046.510058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.370 5.370 3 N -0.108 5.108 4 N -0.277 5.277 5 C -0.051 4.051 6 C -0.324 4.324 7 C 0.246 3.754 8 C -0.465 4.465 9 H 0.099 0.901 10 C 0.026 3.974 11 N -0.819 5.819 12 Si 1.008 2.992 13 H -0.264 1.264 14 H -0.274 1.274 15 H -0.251 1.251 16 N -0.567 5.567 17 H 0.420 0.580 18 C 0.148 3.852 19 H 0.090 0.910 20 H 0.101 0.899 21 H 0.109 0.891 22 H 0.146 0.854 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 -4.354 0.071 9.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.172 5.172 3 N -0.084 5.084 4 N -0.149 5.149 5 C -0.187 4.187 6 C -0.351 4.351 7 C 0.139 3.861 8 C -0.499 4.499 9 H 0.117 0.883 10 C -0.190 4.190 11 N -0.445 5.445 12 Si 0.828 3.172 13 H -0.189 1.189 14 H -0.199 1.199 15 H -0.175 1.175 16 N -0.186 5.186 17 H 0.258 0.742 18 C -0.085 4.085 19 H 0.108 0.892 20 H 0.119 0.881 21 H 0.127 0.873 22 H 0.163 0.837 23 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.370 -2.702 0.074 8.796 hybrid contribution -0.165 -1.520 -0.027 1.529 sum -8.535 -4.222 0.047 9.522 Atomic orbital electron populations 1.22262 0.71482 1.06156 1.04870 1.49356 1.07861 1.00768 1.59207 1.81370 0.93563 1.05581 1.27902 1.73793 1.12491 1.11816 1.16751 1.20509 0.94765 0.89693 1.13738 1.20922 0.99161 0.86194 1.28849 1.18181 0.77884 0.94387 0.95644 1.18940 0.93486 0.90114 1.47383 0.88316 1.26813 0.95996 1.04203 0.91967 1.69884 1.04271 1.34975 1.35371 0.84809 0.78081 0.75069 0.79279 1.18886 1.19874 1.17474 1.41010 1.08404 0.99522 1.69632 0.74163 1.18742 0.92551 0.85052 1.12168 0.89166 0.88073 0.87254 0.83672 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.23 11.53 127.77 1.47 3.70 14 2 N -0.37 -14.96 4.08 -364.61 -1.49 -16.45 14 3 N -0.11 -5.10 13.73 37.02 0.51 -4.59 14 4 N -0.28 -15.06 12.38 -52.39 -0.65 -15.71 14 5 C -0.05 -2.84 8.05 39.71 0.32 -2.52 14 6 C -0.32 -18.74 9.81 23.14 0.23 -18.51 14 7 C 0.25 12.75 6.85 38.74 0.27 13.02 14 8 C -0.47 -22.65 9.45 23.12 0.22 -22.43 14 9 H 0.10 4.23 7.85 -2.91 -0.02 4.21 14 10 C 0.03 1.21 5.50 85.27 0.47 1.68 14 11 N -0.82 -42.32 10.20 21.85 0.22 -42.10 14 12 Si 1.01 35.38 29.56 68.60 2.03 37.41 14 13 H -0.26 -9.00 7.11 99.48 0.71 -8.29 14 14 H -0.27 -9.46 7.11 99.48 0.71 -8.75 14 15 H -0.25 -8.25 7.11 99.48 0.71 -7.54 14 16 N -0.57 -24.60 6.18 -183.88 -1.14 -25.73 14 17 H 0.42 14.08 8.96 -92.70 -0.83 13.25 14 18 C 0.15 6.91 8.82 132.74 1.17 8.08 14 19 H 0.09 1.82 8.14 -2.38 -0.02 1.80 14 20 H 0.10 1.93 8.14 -2.39 -0.02 1.91 14 21 H 0.11 2.18 8.14 -2.39 -0.02 2.16 14 22 H 0.15 8.99 5.62 -2.91 -0.02 8.97 14 23 H 0.29 13.42 8.30 -92.71 -0.77 12.65 14 Total: -1.00 -67.84 212.61 4.06 -63.78 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.42 Total: 20.37 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.14 Total: -16.98 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -2.54 Total: -104.58 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -67.84 4.06 -63.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783422.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.944 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds