Wall clock time and date at job start Mon Mar 30 2020 20:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48500 * 109.46763 * 271.66309 * 3 2 1 5 5 H 1.48497 * 109.47170 * 31.66366 * 3 2 1 6 6 H 1.48498 * 109.47117 * 151.66768 * 3 2 1 7 7 C 1.37876 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00502 * 355.85894 * 7 2 1 9 9 C 1.50707 * 119.99695 * 175.86022 * 7 2 1 10 10 C 1.53000 * 115.54996 * 89.82219 * 9 7 2 11 11 C 1.50704 * 109.46995 * 39.62875 * 10 9 7 12 12 C 1.34508 * 125.78869 * 84.78055 * 11 10 9 13 13 C 1.41379 * 106.84057 * 179.75038 * 12 11 10 14 14 C 1.34515 * 106.84323 * 0.36405 * 13 12 11 15 15 O 1.34296 * 125.78888 * 264.74783 * 11 10 9 16 16 C 1.53002 * 117.51593 * 235.52166 * 9 7 2 17 17 C 1.52993 * 59.99843 * 107.48159 * 16 9 7 18 18 H 0.96999 * 119.99645 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47048 * 279.62710 * 10 9 7 20 20 H 1.09001 * 109.47014 * 159.62873 * 10 9 7 21 21 H 1.07999 * 126.58293 * 359.97438 * 12 11 10 22 22 H 1.08001 * 126.58188 * 180.23515 * 13 12 11 23 23 H 1.08001 * 125.79584 * 179.89220 * 14 13 12 24 24 H 1.08998 * 117.49847 * 214.97334 * 16 9 7 25 25 H 1.08999 * 117.49815 * 359.97438 * 16 9 7 26 26 H 1.09007 * 117.49911 * 252.50491 * 17 16 9 27 27 H 1.08999 * 117.49736 * 107.48916 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4614 2.0667 -1.3995 5 1 1.4647 2.6422 0.7349 6 1 3.5639 1.4303 0.6644 7 6 2.0045 -1.1941 0.0005 8 1 1.4667 -2.1281 0.0685 9 6 3.5087 -1.1957 -0.0937 10 6 4.2535 -1.1418 1.2416 11 6 3.5435 -2.0097 2.2484 12 6 3.7115 -3.3355 2.4014 13 6 2.8591 -3.7375 3.4553 14 6 2.2151 -2.6347 3.8779 15 8 2.6360 -1.5907 3.1453 16 6 4.1451 -2.0050 -1.2255 17 6 4.1426 -0.4763 -1.2859 18 1 -0.4849 0.8401 -0.0004 19 1 4.2789 -0.1134 1.6022 20 1 5.2724 -1.5038 1.1042 21 1 4.3735 -3.9704 1.8313 22 1 2.7452 -4.7383 3.8448 23 1 1.4866 -2.5948 4.6742 24 1 5.0945 -2.4990 -1.0187 25 1 3.4759 -2.5368 -1.9019 26 1 3.4718 -0.0020 -2.0023 27 1 5.0903 0.0355 -1.1189 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799024.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:13 Heat of formation + Delta-G solvation = 17.961348 kcal Electronic energy + Delta-G solvation = -11946.500166 eV Core-core repulsion = 9864.145407 eV Total energy + Delta-G solvation = -2082.354760 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.20949 -38.77672 -34.21993 -33.70737 -32.10302 -28.01314 -27.00384 -23.27610 -22.39353 -21.61592 -20.73029 -18.56850 -17.64368 -16.82019 -16.67231 -15.62237 -15.24251 -14.77685 -14.44657 -13.81669 -13.50553 -13.41272 -13.17322 -12.91111 -12.37923 -12.01981 -11.90504 -11.64354 -10.87884 -10.68821 -10.58199 -10.17736 -9.06145 -8.26492 -6.31932 1.09594 1.35184 1.38426 1.49851 1.92723 2.39049 2.43686 3.10229 3.24890 4.04634 4.21316 4.32711 4.34971 4.43000 4.46813 4.71391 4.88891 4.90701 5.05042 5.12640 5.21894 5.30836 5.52331 5.57312 5.74660 5.89724 6.32082 6.51786 6.75357 7.37052 8.90167 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.035436 B = 0.017023 C = 0.013889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.970423 B = 1644.395788 C = 2015.543721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.019 3.981 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.303 1.303 6 H -0.227 1.227 7 C -0.473 4.473 8 H 0.020 0.980 9 C -0.027 4.027 10 C -0.014 4.014 11 C 0.024 3.976 12 C -0.242 4.242 13 C -0.219 4.219 14 C -0.073 4.073 15 O -0.198 6.198 16 C -0.162 4.162 17 C -0.194 4.194 18 H 0.262 0.738 19 H 0.067 0.933 20 H 0.111 0.889 21 H 0.157 0.843 22 H 0.169 0.831 23 H 0.223 0.777 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.366 -2.769 4.335 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.231 1.231 6 H -0.150 1.150 7 C -0.510 4.510 8 H 0.038 0.962 9 C -0.027 4.027 10 C -0.051 4.051 11 C -0.026 4.026 12 C -0.261 4.261 13 C -0.238 4.238 14 C -0.140 4.140 15 O -0.095 6.095 16 C -0.199 4.199 17 C -0.230 4.230 18 H 0.071 0.929 19 H 0.086 0.914 20 H 0.130 0.870 21 H 0.175 0.825 22 H 0.186 0.814 23 H 0.239 0.761 24 H 0.131 0.869 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.127 -2.374 4.361 11.279 hybrid contribution -0.676 0.466 -0.108 0.828 sum 9.451 -1.909 4.253 10.538 Atomic orbital electron populations 1.70066 1.08475 1.27759 1.53035 1.25826 0.95188 1.02914 0.93822 0.85936 0.80512 0.78487 0.78882 1.19310 1.23053 1.15009 1.20303 0.89463 0.92090 1.49177 0.96192 1.19289 0.92650 1.03460 0.87339 1.20099 0.96953 0.97772 0.90296 1.22533 0.92324 0.95307 0.92480 1.21694 1.06883 0.94264 1.03227 1.22046 1.00974 1.00446 1.00364 1.24564 1.03825 0.85263 1.00362 1.84020 1.47242 1.38301 1.39931 1.22946 1.01781 0.92799 1.02419 1.23041 1.02099 0.95644 1.02262 0.92882 0.91430 0.87042 0.82500 0.81360 0.76060 0.86890 0.91081 0.91166 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.18 13.96 21.45 0.30 -60.89 15 2 C 0.02 1.13 5.47 84.65 0.46 1.59 15 3 Si 0.94 44.94 25.03 68.60 1.72 46.65 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 5 H -0.30 -14.83 7.11 99.48 0.71 -14.12 15 6 H -0.23 -9.69 5.41 99.48 0.54 -9.15 15 7 C -0.47 -27.17 8.33 25.60 0.21 -26.96 15 8 H 0.02 1.32 8.06 -2.91 -0.02 1.30 15 9 C -0.03 -1.18 1.10 -52.93 -0.06 -1.24 15 10 C -0.01 -0.55 5.72 29.85 0.17 -0.38 15 11 C 0.02 1.01 5.54 24.83 0.14 1.14 15 12 C -0.24 -8.99 10.81 22.19 0.24 -8.75 15 13 C -0.22 -7.47 10.91 22.19 0.24 -7.23 15 14 C -0.07 -2.67 12.09 66.97 0.81 -1.86 15 15 O -0.20 -8.92 10.65 -2.47 -0.03 -8.95 15 16 C -0.16 -6.09 9.88 30.59 0.30 -5.78 15 17 C -0.19 -7.49 7.60 30.59 0.23 -7.26 15 18 H 0.26 15.88 8.31 -92.71 -0.77 15.11 15 19 H 0.07 2.67 6.41 -2.39 -0.02 2.66 15 20 H 0.11 3.39 7.94 -2.39 -0.02 3.37 15 21 H 0.16 4.99 8.06 -2.91 -0.02 4.97 15 22 H 0.17 4.45 8.06 -2.91 -0.02 4.43 15 23 H 0.22 6.05 8.06 -2.91 -0.02 6.03 15 24 H 0.11 3.34 8.08 -2.39 -0.02 3.32 15 25 H 0.07 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.07 2.98 7.14 -2.38 -0.02 2.96 15 27 H 0.11 3.48 8.14 -2.39 -0.02 3.46 15 Total: -1.00 -69.98 233.12 5.72 -64.26 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.98 Total: 15.64 kcal Atomic # 6 Polarization: -59.47 SS G_CDS: 2.75 Total: -56.72 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.30 Total: -60.89 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.03 Total: -8.95 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.72 Total: 46.65 kcal Total: -69.98 5.72 -64.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799024.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.219 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds