Wall clock time and date at job start Mon Mar 30 2020 20:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47093 * 2 1 4 4 C 1.50701 * 109.47004 * 119.99804 * 2 1 3 5 5 C 1.38806 * 119.49452 * 274.99934 * 4 2 1 6 6 C 1.38928 * 119.55524 * 180.02562 * 5 4 2 7 7 C 1.38187 * 118.59002 * 359.97438 * 6 5 4 8 8 C 1.40617 * 118.98470 * 0.02562 * 7 6 5 9 9 C 1.41401 * 119.83127 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99733 * 353.77911 * 9 8 7 11 11 C 1.40033 * 120.00329 * 173.78587 * 9 8 7 12 12 N 1.30737 * 120.00166 * 6.33201 * 11 9 8 13 13 Si 1.86807 * 120.00167 * 186.33741 * 11 9 8 14 14 H 1.48506 * 109.46914 * 89.99333 * 13 11 9 15 15 H 1.48497 * 109.47113 * 209.99728 * 13 11 9 16 16 H 1.48499 * 109.47076 * 330.00073 * 13 11 9 17 17 N 1.31401 * 119.49486 * 94.72342 * 4 2 1 18 18 H 1.09009 * 109.46982 * 300.00149 * 1 2 3 19 19 H 1.08996 * 109.47090 * 59.99778 * 1 2 3 20 20 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.46905 * 239.99502 * 2 1 3 22 22 H 1.08995 * 109.46894 * 299.99767 * 3 2 1 23 23 H 1.09001 * 109.47041 * 60.00088 * 3 2 1 24 24 H 1.08998 * 109.46841 * 180.02562 * 3 2 1 25 25 H 1.08001 * 120.22087 * 359.97438 * 5 4 2 26 26 H 1.07996 * 120.70502 * 180.02562 * 6 5 4 27 27 H 1.07997 * 120.50651 * 179.97438 * 7 6 5 28 28 H 0.96996 * 119.99989 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1609 -0.0077 2.4207 6 6 2.6243 -0.6612 3.5557 7 6 2.9448 -2.0022 3.4622 8 6 2.7915 -2.6548 2.2261 9 6 3.1146 -4.0265 2.1101 10 1 3.5718 -4.5456 2.9395 11 6 2.8418 -4.7119 0.9198 12 7 2.4041 -4.0591 -0.1249 13 14 3.1032 -6.5592 0.8247 14 1 1.8539 -7.2570 1.2218 15 1 3.4610 -6.9375 -0.5660 16 1 4.2024 -6.9515 1.7429 17 7 2.3368 -1.9868 1.1617 18 1 -0.3633 0.5139 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.6767 1.9563 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.9031 1.0402 2.4638 26 1 2.7311 -0.1327 4.4914 27 1 3.3082 -2.5404 4.3250 28 1 2.2155 -4.5338 -0.9495 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819361.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:24 Heat of formation + Delta-G solvation = 13.521730 kcal Electronic energy + Delta-G solvation = -11582.446932 eV Core-core repulsion = 9597.618318 eV Total energy + Delta-G solvation = -1984.828614 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.38928 -34.81795 -33.20003 -30.43546 -29.19097 -26.61788 -25.38223 -22.49335 -21.32182 -19.17060 -17.18654 -15.53087 -14.73726 -14.38770 -13.81660 -13.40731 -12.97309 -12.73401 -12.12136 -11.84438 -11.57919 -11.16411 -11.03518 -10.94618 -10.63766 -10.46103 -10.27946 -10.05211 -9.69359 -9.29267 -8.10132 -7.47859 -7.45952 -6.35463 -4.46880 2.78336 3.07186 3.10688 3.13868 3.24801 3.97722 4.77236 5.47703 5.65509 5.72657 6.06530 6.14780 6.18397 6.22597 6.36474 6.51195 6.53095 6.65589 6.81077 6.86629 6.95711 7.07500 7.24365 7.43161 7.67213 7.82724 8.11945 8.28590 8.72849 8.99096 10.18479 10.36942 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.044346 B = 0.012461 C = 0.010283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.241722 B = 2246.544034 C = 2722.401785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 C -0.138 4.138 4 C 0.157 3.843 5 C -0.313 4.313 6 C -0.060 4.060 7 C -0.283 4.283 8 C 0.258 3.742 9 C -0.436 4.436 10 H 0.082 0.918 11 C 0.070 3.930 12 N -0.717 5.717 13 Si 0.906 3.094 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.262 1.262 17 N -0.480 5.480 18 H 0.048 0.952 19 H 0.046 0.954 20 H 0.056 0.944 21 H 0.080 0.920 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 3.525 -0.623 3.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C -0.196 4.196 4 C 0.010 3.990 5 C -0.336 4.336 6 C -0.085 4.085 7 C -0.305 4.305 8 C 0.133 3.867 9 C -0.468 4.468 10 H 0.100 0.900 11 C -0.155 4.155 12 N -0.338 5.338 13 Si 0.730 3.270 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.186 1.186 17 N -0.193 5.193 18 H 0.067 0.933 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.098 0.902 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.616 3.003 -1.622 3.776 hybrid contribution 0.215 -0.363 0.896 0.991 sum -1.401 2.640 -0.726 3.075 Atomic orbital electron populations 1.21695 0.95211 1.01778 1.00275 1.19855 0.95046 0.94281 0.96835 1.21837 1.00894 0.96188 1.00676 1.20991 0.93796 0.91657 0.92522 1.21103 1.17784 0.99581 0.95110 1.20836 0.96678 0.94468 0.96496 1.21711 1.14417 0.95354 0.99047 1.18566 0.88314 0.93300 0.86552 1.19589 1.34901 0.93169 0.99120 0.89976 1.26054 0.93842 1.00302 0.95273 1.70141 1.26432 1.36454 1.00779 0.86363 0.79631 0.82635 0.78364 1.19458 1.20182 1.18623 1.68548 1.15482 1.05391 1.29852 0.93328 0.93480 0.92467 0.90212 0.93450 0.92681 0.93008 0.88736 0.88900 0.88571 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.18 37.16 0.34 -2.04 15 2 C -0.04 -0.83 3.23 -91.77 -0.30 -1.13 15 3 C -0.14 -2.32 8.62 37.16 0.32 -1.99 15 4 C 0.16 3.86 5.79 -82.57 -0.48 3.38 15 5 C -0.31 -7.25 9.19 -39.12 -0.36 -7.61 15 6 C -0.06 -1.42 10.16 -39.34 -0.40 -1.82 15 7 C -0.28 -7.24 9.84 -38.70 -0.38 -7.62 15 8 C 0.26 7.29 6.55 -84.98 -0.56 6.73 15 9 C -0.44 -12.01 9.14 -37.71 -0.34 -12.35 15 10 H 0.08 2.12 7.86 -52.48 -0.41 1.71 15 11 C 0.07 1.83 5.49 -17.35 -0.10 1.73 15 12 N -0.72 -19.38 11.49 55.55 0.64 -18.74 15 13 Si 0.91 18.93 29.56 -169.99 -5.03 13.90 15 14 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 15 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 16 H -0.26 -5.38 7.11 56.52 0.40 -4.97 15 17 N -0.48 -13.50 7.80 -7.36 -0.06 -13.56 15 18 H 0.05 0.84 8.14 -51.92 -0.42 0.42 15 19 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.08 1.72 8.14 -51.93 -0.42 1.30 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.05 0.88 6.48 -51.93 -0.34 0.54 15 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.09 1.94 6.29 -52.49 -0.33 1.61 15 26 H 0.09 1.86 8.06 -52.49 -0.42 1.44 15 27 H 0.10 2.28 8.06 -52.49 -0.42 1.85 15 28 H 0.27 6.64 8.29 -40.82 -0.34 6.31 15 LS Contribution 241.24 15.07 3.64 3.64 Total: -1.00 -29.32 241.24 -6.65 -35.97 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -3.60 Total: 1.50 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.25 Total: -22.71 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.58 Total: -32.30 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.32 -6.65 -35.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819361.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.496 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds