Wall clock time and date at job start Mon Mar 30 2020 20:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.47155 * 2 1 4 4 C 1.38665 * 120.78721 * 264.99857 * 3 2 1 5 5 C 1.38185 * 119.16301 * 180.02562 * 4 3 2 6 6 N 1.31891 * 120.76240 * 359.97438 * 5 4 3 7 7 C 1.31847 * 121.72615 * 0.02562 * 6 5 4 8 8 C 1.38225 * 120.76447 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.41904 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46724 * 264.97273 * 9 8 7 11 11 H 1.08000 * 120.00472 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99707 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99968 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00254 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99627 * 14 12 10 16 16 H 1.48506 * 109.47205 * 210.00041 * 14 12 10 17 17 H 1.48508 * 109.46890 * 329.99867 * 14 12 10 18 18 H 1.08996 * 109.47038 * 59.99888 * 1 2 3 19 19 H 1.08998 * 109.46909 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46538 * 300.00040 * 1 2 3 21 21 H 1.09003 * 109.47242 * 240.00213 * 2 1 3 22 22 H 1.08996 * 109.47038 * 120.00112 * 2 1 3 23 23 H 1.07999 * 120.42301 * 0.04557 * 4 3 2 24 24 H 1.07996 * 119.61944 * 179.72296 * 5 4 3 25 25 H 1.07996 * 119.62233 * 179.97438 * 7 6 5 26 26 H 1.08995 * 109.47083 * 24.97141 * 9 8 7 27 27 H 1.09002 * 109.46838 * 144.97893 * 9 8 7 28 28 H 0.96998 * 119.99972 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3669 2.0554 -1.1867 5 6 2.8246 3.3587 -1.1476 6 7 2.9440 3.9976 0.0000 7 6 2.6354 3.4259 1.1472 8 6 2.1711 2.1245 1.1863 9 6 1.8200 1.4788 2.5020 10 6 3.0007 0.6885 3.0045 11 1 3.9140 0.6573 2.4289 12 6 2.9152 0.0061 4.1995 13 7 3.9458 -0.6832 4.6383 14 14 1.3358 0.0607 5.1954 15 1 0.4497 -1.0562 4.7798 16 1 1.6562 -0.0726 6.6393 17 1 0.6459 1.3543 4.9587 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5139 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 2.2706 1.5378 -2.1297 24 1 3.0915 3.8584 -2.0670 25 1 2.7466 3.9806 2.0671 26 1 1.5635 2.2500 3.2282 27 1 0.9688 0.8121 2.3638 28 1 3.8855 -1.1636 5.4788 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861389.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:35 Heat of formation + Delta-G solvation = 12.347051 kcal Electronic energy + Delta-G solvation = -11536.741984 eV Core-core repulsion = 9551.862433 eV Total energy + Delta-G solvation = -1984.879552 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.70904 -34.85683 -33.14448 -31.47988 -29.92077 -27.79281 -24.07172 -23.30466 -21.27972 -20.17448 -16.86145 -16.07709 -15.89916 -14.70066 -14.15598 -13.58869 -13.42857 -13.05869 -12.90733 -12.32512 -11.93858 -11.74454 -11.44554 -11.01267 -10.73809 -10.61157 -10.20339 -10.07023 -9.48964 -8.83698 -8.80572 -8.62214 -8.07603 -6.13520 -4.13386 1.77690 1.92737 3.23533 3.32470 3.34444 4.35630 4.43008 5.03257 5.16298 5.18856 5.35284 5.58958 5.68134 5.78384 5.84429 5.92069 6.18729 6.23524 6.37033 6.46962 6.62883 6.71597 6.93127 6.98008 7.32551 7.39484 7.62070 8.41934 8.57598 8.91026 9.46140 10.99202 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.012578 C = 0.011117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.449138 B = 2225.487376 C = 2517.955803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.041 4.041 4 C -0.175 4.175 5 C 0.067 3.933 6 N -0.494 5.494 7 C 0.089 3.911 8 C -0.078 4.078 9 C 0.018 3.982 10 C -0.513 4.513 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.875 3.125 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.264 1.264 18 H 0.047 0.953 19 H 0.055 0.945 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.100 0.900 23 H 0.123 0.877 24 H 0.143 0.857 25 H 0.150 0.850 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 2.735 -8.403 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.049 4.049 4 C -0.195 4.195 5 C -0.090 4.090 6 N -0.203 5.203 7 C -0.067 4.067 8 C -0.080 4.080 9 C -0.020 4.020 10 C -0.551 4.551 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.702 3.298 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.189 1.189 18 H 0.066 0.934 19 H 0.074 0.926 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.119 0.881 23 H 0.141 0.859 24 H 0.161 0.839 25 H 0.168 0.832 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.047 3.485 -8.253 10.809 hybrid contribution -0.907 -0.946 0.572 1.430 sum -6.955 2.539 -7.680 10.668 Atomic orbital electron populations 1.21714 0.95245 1.01412 1.01651 1.20601 0.95633 0.92516 1.04039 1.20167 0.96123 0.96285 0.92345 1.21906 1.02762 0.96602 0.98259 1.22434 0.98357 0.92231 0.95959 1.67565 1.15543 1.38467 0.98709 1.22619 0.95789 0.92797 0.95530 1.21147 0.95716 0.94251 0.96853 1.18785 0.97986 0.96024 0.89214 1.20853 0.98814 1.29362 1.06087 0.90922 1.24979 0.96232 0.94693 0.97120 1.69896 1.30149 1.31939 1.21549 0.86848 0.84124 0.79190 0.79666 1.20063 1.21166 1.18861 0.93367 0.92556 0.92303 0.91783 0.88139 0.85924 0.83933 0.83237 0.95319 0.95179 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.75 37.16 0.36 -1.75 15 2 C -0.09 -1.55 5.42 -27.88 -0.15 -1.70 15 3 C -0.04 -0.77 5.17 -104.32 -0.54 -1.31 15 4 C -0.18 -2.88 9.80 -39.44 -0.39 -3.27 15 5 C 0.07 1.12 11.18 -17.55 -0.20 0.92 15 6 N -0.49 -9.52 10.36 -13.25 -0.14 -9.65 15 7 C 0.09 1.80 10.84 -17.55 -0.19 1.61 15 8 C -0.08 -1.63 5.09 -104.48 -0.53 -2.16 15 9 C 0.02 0.41 3.53 -29.03 -0.10 0.30 15 10 C -0.51 -14.06 8.96 -34.44 -0.31 -14.37 15 11 H 0.07 2.21 7.98 -52.49 -0.42 1.79 15 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 15 13 N -0.90 -26.87 13.96 55.43 0.77 -26.10 15 14 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 15 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 16 H -0.29 -6.79 7.11 56.52 0.40 -6.38 15 17 H -0.26 -6.00 6.54 56.52 0.37 -5.63 15 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.06 0.93 6.87 -51.93 -0.36 0.57 15 21 H 0.06 0.95 8.07 -51.93 -0.42 0.54 15 22 H 0.10 2.02 6.61 -51.93 -0.34 1.67 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 24 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 25 H 0.15 2.82 8.06 -52.49 -0.42 2.40 15 26 H 0.03 0.66 7.12 -51.93 -0.37 0.29 15 27 H 0.03 0.67 5.25 -51.93 -0.27 0.40 15 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 LS Contribution 238.43 15.07 3.59 3.59 Total: -1.00 -29.89 238.43 -6.04 -35.93 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.46 Total: -0.04 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.14 Total: -19.81 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.64 Total: -35.75 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.89 -6.04 -35.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861389.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.274 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds