Wall clock time and date at job start Mon Mar 30 2020 20:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.47155 * 2 1 4 4 C 1.38665 * 120.78721 * 264.99857 * 3 2 1 5 5 C 1.38185 * 119.16301 * 180.02562 * 4 3 2 6 6 N 1.31891 * 120.76240 * 359.97438 * 5 4 3 7 7 C 1.31847 * 121.72615 * 0.02562 * 6 5 4 8 8 C 1.38225 * 120.76447 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.41904 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46724 * 264.97273 * 9 8 7 11 11 H 1.08000 * 120.00472 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99707 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99968 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00254 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99627 * 14 12 10 16 16 H 1.48506 * 109.47205 * 210.00041 * 14 12 10 17 17 H 1.48508 * 109.46890 * 329.99867 * 14 12 10 18 18 H 1.08996 * 109.47038 * 59.99888 * 1 2 3 19 19 H 1.08998 * 109.46909 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46538 * 300.00040 * 1 2 3 21 21 H 1.09003 * 109.47242 * 240.00213 * 2 1 3 22 22 H 1.08996 * 109.47038 * 120.00112 * 2 1 3 23 23 H 1.07999 * 120.42301 * 0.04557 * 4 3 2 24 24 H 1.07996 * 119.61944 * 179.72296 * 5 4 3 25 25 H 1.07996 * 119.62233 * 179.97438 * 7 6 5 26 26 H 1.08995 * 109.47083 * 24.97141 * 9 8 7 27 27 H 1.09002 * 109.46838 * 144.97893 * 9 8 7 28 28 H 0.96998 * 119.99972 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3669 2.0554 -1.1867 5 6 2.8246 3.3587 -1.1476 6 7 2.9440 3.9976 0.0000 7 6 2.6354 3.4259 1.1472 8 6 2.1711 2.1245 1.1863 9 6 1.8200 1.4788 2.5020 10 6 3.0007 0.6885 3.0045 11 1 3.9140 0.6573 2.4289 12 6 2.9152 0.0061 4.1995 13 7 3.9458 -0.6832 4.6383 14 14 1.3358 0.0607 5.1954 15 1 0.4497 -1.0562 4.7798 16 1 1.6562 -0.0726 6.6393 17 1 0.6459 1.3543 4.9587 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3632 0.5139 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 2.2706 1.5378 -2.1297 24 1 3.0915 3.8584 -2.0670 25 1 2.7466 3.9806 2.0671 26 1 1.5635 2.2500 3.2282 27 1 0.9688 0.8121 2.3638 28 1 3.8855 -1.1636 5.4788 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861389.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:23:35 Heat of formation + Delta-G solvation = -6.151935 kcal Electronic energy + Delta-G solvation = -11537.544161 eV Core-core repulsion = 9551.862433 eV Total energy + Delta-G solvation = -1985.681728 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.14722 -36.37391 -34.98676 -33.25195 -31.24847 -29.57049 -25.57537 -24.92576 -22.82829 -21.68325 -18.99221 -17.53679 -17.28867 -16.50282 -15.79493 -15.00082 -14.79061 -14.71785 -14.33877 -14.06550 -13.56484 -13.23734 -13.09392 -12.51920 -12.30038 -12.21706 -11.88795 -11.67265 -11.56685 -10.79561 -10.25357 -10.20688 -9.63520 -8.30179 -6.35056 0.35324 0.47651 1.36025 1.38556 1.49595 2.34662 2.98757 3.04299 3.67944 3.87197 3.98380 4.25640 4.29421 4.46276 4.54421 4.67040 4.77359 4.96235 4.96982 5.08708 5.12441 5.24954 5.40346 5.42389 5.56747 5.76482 5.95715 6.24902 6.69997 7.14154 7.28154 8.86381 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.012578 C = 0.011117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.449138 B = 2225.487376 C = 2517.955803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.051 4.051 4 C -0.167 4.167 5 C 0.071 3.929 6 N -0.511 5.511 7 C 0.074 3.926 8 C -0.111 4.111 9 C 0.027 3.973 10 C -0.512 4.512 11 H 0.024 0.976 12 C 0.012 3.988 13 N -0.948 5.948 14 Si 0.944 3.056 15 H -0.261 1.261 16 H -0.285 1.285 17 H -0.246 1.246 18 H 0.069 0.931 19 H 0.072 0.928 20 H 0.043 0.957 21 H 0.089 0.911 22 H 0.061 0.939 23 H 0.164 0.836 24 H 0.184 0.816 25 H 0.149 0.851 26 H 0.029 0.971 27 H 0.040 0.960 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 3.091 -10.088 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 C -0.059 4.059 4 C -0.187 4.187 5 C -0.086 4.086 6 N -0.220 5.220 7 C -0.081 4.081 8 C -0.113 4.113 9 C -0.010 4.010 10 C -0.550 4.550 11 H 0.042 0.958 12 C -0.185 4.185 13 N -0.588 5.588 14 Si 0.767 3.233 15 H -0.186 1.186 16 H -0.210 1.210 17 H -0.169 1.169 18 H 0.088 0.912 19 H 0.091 0.909 20 H 0.062 0.938 21 H 0.107 0.893 22 H 0.080 0.920 23 H 0.181 0.819 24 H 0.201 0.799 25 H 0.166 0.834 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.885 3.856 -9.949 13.267 hybrid contribution -0.233 -1.041 0.940 1.422 sum -8.118 2.815 -9.008 12.449 Atomic orbital electron populations 1.21689 0.93223 1.02663 1.01946 1.20603 0.97390 0.91414 1.03335 1.20495 0.95809 0.96985 0.92580 1.22301 1.00967 0.96503 0.98894 1.23185 0.96393 0.92556 0.96437 1.67615 1.16209 1.39039 0.99174 1.22651 0.96373 0.92815 0.96300 1.21055 0.98392 0.95092 0.96774 1.18585 0.96295 0.95555 0.90593 1.21008 0.98643 1.29714 1.05658 0.95767 1.25915 1.00018 0.94188 0.98423 1.70055 1.32856 1.33530 1.22401 0.85743 0.79604 0.80380 0.77555 1.18578 1.21049 1.16930 0.91231 0.90868 0.93789 0.89298 0.92001 0.81867 0.79871 0.83355 0.95278 0.94179 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.75 71.98 0.70 -3.02 15 2 C -0.09 -2.95 5.42 29.85 0.16 -2.79 15 3 C -0.05 -1.83 5.17 -19.67 -0.10 -1.93 15 4 C -0.17 -4.92 9.80 22.36 0.22 -4.70 15 5 C 0.07 2.15 11.18 84.67 0.95 3.10 15 6 N -0.51 -18.96 10.36 -195.85 -2.03 -20.99 15 7 C 0.07 2.99 10.84 84.69 0.92 3.91 15 8 C -0.11 -4.67 5.09 -19.77 -0.10 -4.77 15 9 C 0.03 1.28 3.53 29.10 0.10 1.38 15 10 C -0.51 -29.08 8.96 25.60 0.23 -28.85 15 11 H 0.02 1.56 7.98 -2.91 -0.02 1.53 15 12 C 0.01 0.68 5.47 84.65 0.46 1.14 15 13 N -0.95 -58.75 13.96 21.45 0.30 -58.45 15 14 Si 0.94 42.91 27.47 68.60 1.88 44.79 15 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 15 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 17 H -0.25 -10.36 6.54 99.48 0.65 -9.71 15 18 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 19 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.04 1.30 6.87 -2.39 -0.02 1.29 15 21 H 0.09 2.41 8.07 -2.39 -0.02 2.39 15 22 H 0.06 2.51 6.61 -2.39 -0.02 2.49 15 23 H 0.16 3.45 8.06 -2.91 -0.02 3.42 15 24 H 0.18 3.95 8.06 -2.91 -0.02 3.93 15 25 H 0.15 5.75 8.06 -2.91 -0.02 5.73 15 26 H 0.03 1.33 7.12 -2.39 -0.02 1.31 15 27 H 0.04 1.77 5.25 -2.39 -0.01 1.76 15 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 Total: -1.00 -66.53 238.43 4.78 -61.76 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.08 Total: 9.42 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 3.54 Total: -36.52 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.73 Total: -79.44 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -66.53 4.78 -61.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861389.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.604 kcal (2) G-P(sol) polarization free energy of solvation -66.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds