Wall clock time and date at job start Mon Mar 30 2020 20:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99930 * 2 1 4 4 H 1.48497 * 109.47231 * 240.00085 * 3 2 1 5 5 H 1.48501 * 109.47256 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46558 * 120.00504 * 3 2 1 7 7 C 1.37878 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.32673 * 125.59169 * 89.99590 * 10 9 7 12 12 N 1.38780 * 107.71309 * 179.97438 * 11 10 9 13 13 C 1.37206 * 145.44277 * 180.43290 * 12 11 10 14 14 C 1.34673 * 106.91362 * 179.97438 * 13 12 11 15 15 N 1.34171 * 108.30646 * 359.58373 * 14 13 12 16 16 C 1.31496 * 109.33109 * 0.26516 * 15 14 13 17 17 O 1.35052 * 144.36689 * 179.97438 * 16 15 14 18 18 H 0.96999 * 119.99474 * 359.97438 * 1 2 3 19 19 H 1.09003 * 109.47077 * 59.99936 * 9 7 2 20 20 H 1.09004 * 109.47364 * 300.00335 * 9 7 2 21 21 H 1.08004 * 126.14356 * 359.97438 * 11 10 9 22 22 H 1.08005 * 126.54493 * 359.82896 * 13 12 11 23 23 H 1.08002 * 125.85172 * 179.85193 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.7320 -4.2316 1.0783 12 7 3.5898 -5.2359 0.6523 13 6 4.4391 -6.2390 1.0461 14 6 4.9271 -6.8021 -0.0758 15 7 4.3891 -6.1729 -1.1316 16 6 3.5806 -5.2261 -0.7085 17 8 2.7413 -4.2432 -1.1003 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5571 0.8897 21 1 2.5125 -3.9740 2.1040 22 1 4.6735 -6.5215 2.0618 23 1 5.6280 -7.6227 -0.1183 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260037941.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:07 Heat of formation + Delta-G solvation = 66.537710 kcal Electronic energy + Delta-G solvation = -11231.934266 eV Core-core repulsion = 9048.145592 eV Total energy + Delta-G solvation = -2183.788674 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.91641 -40.91440 -35.81658 -35.12359 -32.57657 -30.32569 -28.63331 -25.50981 -23.41426 -22.76152 -22.08872 -18.84496 -18.20907 -17.95374 -17.25894 -16.77291 -15.58525 -14.88390 -14.78738 -14.44657 -14.29029 -14.18377 -13.48094 -12.86326 -12.63780 -12.52517 -12.05356 -11.66931 -11.26029 -10.68688 -9.56174 -9.26995 -8.30355 -6.44882 0.47009 1.03019 1.20132 1.42009 1.43576 1.52038 1.68561 1.96752 2.37503 3.03086 3.38371 3.73768 4.07735 4.24000 4.53381 4.68535 4.78450 5.10455 5.13419 5.39068 5.60112 5.78968 5.93292 6.27409 6.62087 6.78983 7.24623 8.78557 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.076311 B = 0.008722 C = 0.008538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.829610 B = 3209.501298 C = 3278.733326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.018 3.982 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.097 3.903 10 C 0.058 3.942 11 C -0.064 4.064 12 N -0.425 5.425 13 C -0.063 4.063 14 C 0.009 3.991 15 N -0.502 5.502 16 C 0.286 3.714 17 O -0.198 6.198 18 H 0.271 0.729 19 H 0.026 0.974 20 H 0.067 0.933 21 H 0.223 0.777 22 H 0.224 0.776 23 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.451 -8.317 5.305 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.060 3.940 10 C 0.010 3.990 11 C -0.178 4.178 12 N -0.112 5.112 13 C -0.192 4.192 14 C -0.137 4.137 15 N -0.239 5.239 16 C -0.007 4.007 17 O -0.094 6.094 18 H 0.080 0.920 19 H 0.044 0.956 20 H 0.085 0.915 21 H 0.240 0.760 22 H 0.241 0.759 23 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.319 -8.243 4.434 11.293 hybrid contribution -0.040 1.102 0.560 1.237 sum 6.279 -7.141 4.994 10.741 Atomic orbital electron populations 1.70009 1.07355 1.28687 1.49650 1.25778 0.95795 1.02775 0.93864 0.85467 0.78344 0.78016 0.79078 1.20016 1.20120 1.18900 1.21199 0.93230 0.90641 1.53402 0.92688 1.17920 0.90552 0.85944 0.99552 1.23470 0.98509 0.95955 0.81083 1.22203 0.99783 0.94012 1.01814 1.44703 1.32028 1.24968 1.09483 1.22938 0.99503 0.93321 1.03420 1.23241 1.02984 1.02531 0.84946 1.70280 1.13016 1.07878 1.32689 1.22823 1.00449 0.96718 0.80677 1.84619 1.50876 1.40079 1.33786 0.91956 0.95622 0.91526 0.76003 0.75903 0.75221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.18 13.29 21.45 0.28 -50.89 14 2 C 0.02 0.97 5.46 84.65 0.46 1.44 14 3 Si 0.97 41.95 29.54 68.60 2.03 43.98 14 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 14 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 14 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 14 7 C -0.55 -29.33 9.09 25.60 0.23 -29.10 14 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 14 9 C 0.10 4.78 5.49 29.10 0.16 4.94 14 10 C 0.06 2.56 6.46 24.52 0.16 2.72 14 11 C -0.06 -2.32 11.83 82.42 0.98 -1.34 14 12 N -0.43 -15.21 3.57 -470.02 -1.68 -16.89 14 13 C -0.06 -1.68 12.04 83.03 1.00 -0.68 14 14 C 0.01 0.26 11.85 83.52 0.99 1.25 14 15 N -0.50 -19.33 11.29 -313.89 -3.54 -22.87 14 16 C 0.29 12.09 9.78 179.64 1.76 13.85 14 17 O -0.20 -9.29 10.77 -19.44 -0.21 -9.50 14 18 H 0.27 14.21 8.31 -92.71 -0.77 13.44 14 19 H 0.03 1.35 8.14 -2.39 -0.02 1.33 14 20 H 0.07 3.17 8.14 -2.39 -0.02 3.15 14 21 H 0.22 6.39 8.06 -2.91 -0.02 6.37 14 22 H 0.22 3.57 8.06 -2.91 -0.02 3.55 14 23 H 0.23 3.81 8.06 -2.91 -0.02 3.79 14 Total: -1.00 -64.68 218.29 3.84 -60.85 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.22 Total: 2.26 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.74 Total: -6.92 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -4.93 Total: -90.65 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.21 Total: -9.50 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -64.68 3.84 -60.85 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037941.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.386 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds