Wall clock time and date at job start Mon Mar 30 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31058 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48504 * 109.46881 * 274.97202 * 3 2 1 5 5 H 1.48502 * 109.47146 * 34.96936 * 3 2 1 6 6 H 1.48494 * 109.46930 * 154.97431 * 3 2 1 7 7 C 1.39669 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00417 * 186.13403 * 7 2 1 9 9 C 1.41349 * 119.99981 * 6.13754 * 7 2 1 10 10 C 1.39584 * 127.23863 * 352.08006 * 9 7 2 11 11 N 1.35165 * 108.00236 * 180.02562 * 10 9 7 12 12 H 0.97009 * 124.78362 * 179.97438 * 11 10 9 13 13 C 1.36152 * 110.43500 * 359.94902 * 11 10 9 14 14 C 1.34940 * 109.02811 * 0.09317 * 13 11 10 15 15 C 1.50592 * 123.90102 * 179.77059 * 14 13 11 16 16 C 1.53578 * 107.81425 * 344.51728 * 15 14 13 17 17 N 1.46963 * 109.48269 * 48.59815 * 16 15 14 18 18 C 1.47227 * 111.56060 * 288.75289 * 17 16 15 19 19 H 0.97000 * 119.99752 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.00098 * 0.03216 * 10 9 7 21 21 H 1.08996 * 109.78919 * 224.94020 * 15 14 13 22 22 H 1.08991 * 109.79065 * 104.09839 * 15 14 13 23 23 H 1.08997 * 109.47215 * 288.59519 * 16 15 14 24 24 H 1.08998 * 109.46925 * 168.60396 * 16 15 14 25 25 H 1.00904 * 110.99727 * 164.39704 * 17 16 15 26 26 H 1.09002 * 109.68864 * 171.36354 * 18 17 16 27 27 H 1.08997 * 109.69486 * 291.91067 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.3869 2.1071 -1.3949 5 1 1.4984 2.6201 0.8024 6 1 3.5907 1.4122 0.5922 7 6 2.0090 -1.2095 0.0005 8 1 3.0844 -1.2122 0.1005 9 6 1.3084 -2.4302 -0.1298 10 6 -0.0750 -2.6160 -0.1145 11 7 -0.3210 -3.9361 -0.2689 12 1 -1.2048 -4.3352 -0.2931 13 6 0.8466 -4.6266 -0.3864 14 6 1.8792 -3.7615 -0.3078 15 6 3.3260 -4.1705 -0.3931 16 6 3.3976 -5.6905 -0.1849 17 7 2.4081 -6.3506 -1.0481 18 6 1.0341 -6.1136 -0.5754 19 1 -0.4850 0.8401 -0.0004 20 1 -0.8183 -1.8410 0.0004 21 1 3.8990 -3.6642 0.3836 22 1 3.7250 -3.9132 -1.3742 23 1 3.1838 -5.9248 0.8579 24 1 4.3962 -6.0454 -0.4396 25 1 2.5983 -7.3385 -1.1261 26 1 0.3228 -6.4824 -1.3144 27 1 0.8781 -6.6275 0.3730 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088335.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:10 Heat of formation + Delta-G solvation = 37.125720 kcal Electronic energy + Delta-G solvation = -11767.286422 eV Core-core repulsion = 9718.055443 eV Total energy + Delta-G solvation = -2049.230979 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40707 -35.97702 -33.22721 -31.01876 -28.38568 -28.05731 -24.83413 -22.65597 -21.61358 -19.28334 -17.28390 -16.63157 -15.58355 -14.77817 -14.50668 -14.09855 -13.84122 -12.45607 -12.30560 -12.17155 -12.04950 -11.42490 -11.04968 -10.92041 -10.80179 -10.41914 -10.27812 -9.49778 -9.35283 -9.02242 -8.04794 -6.99911 -6.32651 -6.23591 -3.80719 3.20698 3.29555 3.34375 3.76879 4.27746 4.46151 4.51463 4.96289 5.58296 5.72635 5.82211 5.89861 6.01488 6.08705 6.12002 6.66151 6.88895 7.02252 7.27533 7.43224 7.57963 7.61014 7.90209 8.12361 8.31037 8.59260 9.04150 9.33547 9.45746 9.51388 10.76979 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.057937 B = 0.011490 C = 0.009741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.170299 B = 2436.338191 C = 2873.887020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.425 4.425 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.106 4.106 11 N -0.564 5.564 12 H 0.386 0.614 13 C -0.036 4.036 14 C -0.207 4.207 15 C -0.026 4.026 16 C 0.064 3.936 17 N -0.684 5.684 18 C 0.144 3.856 19 H 0.267 0.733 20 H 0.183 0.817 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.026 0.974 24 H 0.064 0.936 25 H 0.334 0.666 26 H 0.066 0.934 27 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 -7.914 0.029 8.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.152 4.152 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.014 3.986 10 C -0.234 4.234 11 N -0.160 5.160 12 H 0.217 0.783 13 C -0.148 4.148 14 C -0.218 4.218 15 C -0.064 4.064 16 C -0.066 4.066 17 N -0.315 5.315 18 C 0.015 3.985 19 H 0.077 0.923 20 H 0.199 0.801 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.082 0.918 25 H 0.151 0.849 26 H 0.085 0.915 27 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.488 -7.226 -0.401 7.389 hybrid contribution -0.142 0.102 0.703 0.724 sum 1.345 -7.124 0.302 7.256 Atomic orbital electron populations 1.69544 1.07011 1.27101 1.44202 1.25564 0.94732 1.00188 0.94690 0.86285 0.80053 0.81736 0.78334 1.20295 1.20965 1.19278 1.18717 0.93869 0.89430 1.43947 0.91677 1.18054 0.90582 0.90309 0.99681 1.23262 0.98698 0.81983 1.19453 1.41018 1.05258 1.07949 1.61780 0.78264 1.19361 0.86978 0.92201 1.16260 1.20066 0.92306 0.93950 1.15470 1.19753 0.94420 0.91868 1.00337 1.22010 0.94038 0.96654 0.93850 1.60082 1.02101 1.15599 1.53698 1.20134 0.90000 0.91693 0.96710 0.92252 0.80070 0.92315 0.92441 0.95551 0.91775 0.84874 0.91531 0.95739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.66 10.45 55.53 0.58 -23.08 15 2 C 0.06 1.55 5.49 -17.35 -0.10 1.45 15 3 Si 0.91 20.84 29.56 -169.99 -5.03 15.82 15 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.43 -12.34 9.41 -37.87 -0.36 -12.69 15 8 H 0.06 1.83 7.85 -52.49 -0.41 1.42 15 9 C 0.02 0.54 6.09 -105.13 -0.64 -0.10 15 10 C -0.11 -2.87 10.95 -15.58 -0.17 -3.05 15 11 N -0.56 -12.89 5.90 -8.18 -0.05 -12.94 15 12 H 0.39 7.23 8.96 -40.82 -0.37 6.86 15 13 C -0.04 -0.82 7.14 -81.67 -0.58 -1.41 15 14 C -0.21 -5.24 6.20 -102.76 -0.64 -5.87 15 15 C -0.03 -0.55 6.48 -27.64 -0.18 -0.73 15 16 C 0.06 1.09 6.54 -3.49 -0.02 1.07 15 17 N -0.68 -11.40 6.80 -114.23 -0.78 -12.18 15 18 C 0.14 2.56 6.95 -4.62 -0.03 2.53 15 19 H 0.27 6.91 8.30 -40.82 -0.34 6.57 15 20 H 0.18 5.08 5.86 -52.49 -0.31 4.77 15 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.03 0.45 8.08 -51.93 -0.42 0.03 15 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.33 4.33 8.90 -39.29 -0.35 3.98 15 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 LS Contribution 227.94 15.07 3.44 3.44 Total: -1.00 -31.23 227.94 -7.65 -38.89 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.10 Total: 8.85 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.72 Total: -18.80 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.24 Total: -48.20 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.23 -7.65 -38.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088335.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.011 kcal (2) G-P(sol) polarization free energy of solvation -31.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds