Wall clock time and date at job start Mon Mar 30 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31058 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48504 * 109.46881 * 274.97202 * 3 2 1 5 5 H 1.48502 * 109.47146 * 34.96936 * 3 2 1 6 6 H 1.48494 * 109.46930 * 154.97431 * 3 2 1 7 7 C 1.39669 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00417 * 186.13403 * 7 2 1 9 9 C 1.41349 * 119.99981 * 6.13754 * 7 2 1 10 10 C 1.39584 * 127.23863 * 352.08006 * 9 7 2 11 11 N 1.35165 * 108.00236 * 180.02562 * 10 9 7 12 12 H 0.97009 * 124.78362 * 179.97438 * 11 10 9 13 13 C 1.36152 * 110.43500 * 359.94902 * 11 10 9 14 14 C 1.34940 * 109.02811 * 0.09317 * 13 11 10 15 15 C 1.50592 * 123.90102 * 179.77059 * 14 13 11 16 16 C 1.53578 * 107.81425 * 344.51728 * 15 14 13 17 17 N 1.46963 * 109.48269 * 48.59815 * 16 15 14 18 18 C 1.47227 * 111.56060 * 288.75289 * 17 16 15 19 19 H 0.97000 * 119.99752 * 0.02562 * 1 2 3 20 20 H 1.08002 * 126.00098 * 0.03216 * 10 9 7 21 21 H 1.08996 * 109.78919 * 224.94020 * 15 14 13 22 22 H 1.08991 * 109.79065 * 104.09839 * 15 14 13 23 23 H 1.08997 * 109.47215 * 288.59519 * 16 15 14 24 24 H 1.08998 * 109.46925 * 168.60396 * 16 15 14 25 25 H 1.00904 * 110.99727 * 164.39704 * 17 16 15 26 26 H 1.09002 * 109.68864 * 171.36354 * 18 17 16 27 27 H 1.08997 * 109.69486 * 291.91067 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.3869 2.1071 -1.3949 5 1 1.4984 2.6201 0.8024 6 1 3.5907 1.4122 0.5922 7 6 2.0090 -1.2095 0.0005 8 1 3.0844 -1.2122 0.1005 9 6 1.3084 -2.4302 -0.1298 10 6 -0.0750 -2.6160 -0.1145 11 7 -0.3210 -3.9361 -0.2689 12 1 -1.2048 -4.3352 -0.2931 13 6 0.8466 -4.6266 -0.3864 14 6 1.8792 -3.7615 -0.3078 15 6 3.3260 -4.1705 -0.3931 16 6 3.3976 -5.6905 -0.1849 17 7 2.4081 -6.3506 -1.0481 18 6 1.0341 -6.1136 -0.5754 19 1 -0.4850 0.8401 -0.0004 20 1 -0.8183 -1.8410 0.0004 21 1 3.8990 -3.6642 0.3836 22 1 3.7250 -3.9132 -1.3742 23 1 3.1838 -5.9248 0.8579 24 1 4.3962 -6.0454 -0.4396 25 1 2.5983 -7.3385 -1.1261 26 1 0.3228 -6.4824 -1.3144 27 1 0.8781 -6.6275 0.3730 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088335.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:10 Heat of formation + Delta-G solvation = 14.387068 kcal Electronic energy + Delta-G solvation = -11768.272444 eV Core-core repulsion = 9718.055443 eV Total energy + Delta-G solvation = -2050.217001 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.22862 -37.48314 -35.28544 -32.72987 -30.14642 -29.82495 -26.84473 -24.33754 -23.14029 -21.29810 -19.04753 -18.36871 -17.66453 -16.36352 -16.20426 -15.70186 -15.28073 -14.30430 -14.14661 -13.86495 -13.66074 -13.21583 -12.87681 -12.77036 -12.54461 -12.18036 -11.88984 -11.44150 -11.22308 -11.04882 -9.36110 -9.00488 -8.30377 -8.23184 -5.95239 1.38287 1.41115 1.54755 1.93349 2.34956 2.40579 2.97137 3.47002 3.65664 4.16764 4.36581 4.50367 4.58558 4.66936 4.70179 5.04200 5.19962 5.29456 5.39674 5.47550 5.86519 5.98631 6.10521 6.27768 6.54190 6.75840 7.01136 7.29274 7.42575 7.57266 8.71089 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.057937 B = 0.011490 C = 0.009741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.170299 B = 2436.338191 C = 2873.887020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.009 3.991 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.463 4.463 8 H 0.057 0.943 9 C -0.028 4.028 10 C -0.131 4.131 11 N -0.555 5.555 12 H 0.406 0.594 13 C -0.019 4.019 14 C -0.248 4.248 15 C -0.028 4.028 16 C 0.073 3.927 17 N -0.691 5.691 18 C 0.147 3.853 19 H 0.273 0.727 20 H 0.167 0.833 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.029 0.971 24 H 0.098 0.902 25 H 0.361 0.639 26 H 0.092 0.908 27 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 -9.378 -0.180 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.075 0.925 9 C -0.033 4.033 10 C -0.259 4.259 11 N -0.153 5.153 12 H 0.241 0.759 13 C -0.132 4.132 14 C -0.259 4.259 15 C -0.066 4.066 16 C -0.056 4.056 17 N -0.324 5.324 18 C 0.017 3.983 19 H 0.083 0.917 20 H 0.183 0.817 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.117 0.883 25 H 0.182 0.818 26 H 0.110 0.890 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.001 -8.739 -0.613 8.986 hybrid contribution -0.352 0.481 0.757 0.964 sum 1.648 -8.258 0.144 8.422 Atomic orbital electron populations 1.69651 1.08247 1.28268 1.44140 1.26463 0.95736 1.03592 0.93817 0.85171 0.78718 0.76955 0.78600 1.19628 1.19723 1.18827 1.18982 0.93776 0.90971 1.46015 0.92469 1.18610 0.91891 0.92012 1.00800 1.22975 0.98090 0.83606 1.21272 1.40916 1.06647 1.06724 1.61033 0.75932 1.20204 0.85942 0.94753 1.12306 1.20587 0.95051 0.93217 1.17000 1.19799 0.92008 0.95366 0.99455 1.21903 0.96101 0.93382 0.94229 1.59965 1.01319 1.17680 1.53485 1.20268 0.91383 0.87774 0.98840 0.91690 0.81664 0.93211 0.93459 0.95258 0.88327 0.81797 0.88988 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.05 10.45 21.79 0.23 -49.82 15 2 C 0.01 0.52 5.49 85.15 0.47 0.99 15 3 Si 0.98 43.51 29.56 68.60 2.03 45.53 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 6 H -0.26 -11.38 7.11 99.48 0.71 -10.68 15 7 C -0.46 -27.97 9.41 23.38 0.22 -27.75 15 8 H 0.06 3.38 7.85 -2.91 -0.02 3.35 15 9 C -0.03 -1.63 6.09 -20.19 -0.12 -1.75 15 10 C -0.13 -7.32 10.95 84.50 0.93 -6.39 15 11 N -0.56 -25.20 5.90 -179.78 -1.06 -26.26 15 12 H 0.41 14.74 8.96 -92.70 -0.83 13.91 15 13 C -0.02 -0.83 7.14 41.25 0.29 -0.53 15 14 C -0.25 -12.66 6.20 -18.66 -0.12 -12.78 15 15 C -0.03 -1.19 6.48 30.01 0.19 -0.99 15 16 C 0.07 2.28 6.54 86.49 0.57 2.85 15 17 N -0.69 -20.29 6.80 -515.32 -3.50 -23.79 15 18 C 0.15 4.65 6.95 85.61 0.60 5.25 15 19 H 0.27 14.40 8.30 -92.71 -0.77 13.63 15 20 H 0.17 9.68 5.86 -2.91 -0.02 9.66 15 21 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.03 0.91 8.08 -2.39 -0.02 0.89 15 24 H 0.10 2.42 8.14 -2.39 -0.02 2.40 15 25 H 0.36 7.56 8.90 -89.69 -0.80 6.76 15 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 Total: -1.00 -69.52 227.94 0.28 -69.24 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.43 Total: 26.21 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 3.02 Total: -41.12 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.34 Total: -99.87 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.52 0.28 -69.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088335.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.628 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds