Wall clock time and date at job start Mon Mar 30 2020 20:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00084 * 2 1 4 4 H 1.48499 * 109.46989 * 270.00046 * 3 2 1 5 5 H 1.48500 * 109.46727 * 30.00377 * 3 2 1 6 6 H 1.48501 * 109.47038 * 150.00297 * 3 2 1 7 7 C 1.37886 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99352 * 359.97438 * 7 2 1 10 10 H 1.09010 * 110.30380 * 57.83516 * 9 7 2 11 11 C 1.53812 * 110.34211 * 295.54907 * 9 7 2 12 12 C 1.51005 * 104.61672 * 241.12567 * 11 9 7 13 13 O 1.21440 * 125.58261 * 179.97438 * 12 11 9 14 14 C 1.41332 * 108.83607 * 0.02562 * 12 11 9 15 15 O 1.35822 * 140.82611 * 179.97438 * 14 12 11 16 16 C 1.33694 * 109.50766 * 180.02562 * 15 14 12 17 17 C 1.35249 * 109.05769 * 0.02562 * 16 15 14 18 18 C 1.37436 * 111.85232 * 0.02562 * 14 12 11 19 19 H 0.96995 * 120.00246 * 359.97438 * 1 2 3 20 20 H 1.08995 * 110.40815 * 359.91569 * 11 9 7 21 21 H 1.09005 * 110.40500 * 122.34446 * 11 9 7 22 22 H 1.07995 * 125.46829 * 179.97438 * 16 15 14 23 23 H 1.07996 * 126.47797 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5902 -2.5544 -0.8657 11 6 0.4455 -2.6514 1.3009 12 6 1.0066 -3.8923 1.9533 13 8 0.6393 -4.3622 3.0112 14 6 2.0301 -4.4167 1.1318 15 8 2.9178 -5.4435 1.0817 16 6 3.6440 -5.3518 -0.0371 17 6 3.2438 -4.2648 -0.7353 18 6 2.2153 -3.6601 -0.0005 19 1 -0.4850 0.8400 0.0004 20 1 0.5941 -1.7838 1.9436 21 1 -0.6134 -2.7844 1.0791 22 1 4.4252 -6.0353 -0.3349 23 1 3.6414 -3.9270 -1.6809 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260316097.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:19 Heat of formation + Delta-G solvation = -14.118244 kcal Electronic energy + Delta-G solvation = -11507.250689 eV Core-core repulsion = 9287.671759 eV Total energy + Delta-G solvation = -2219.578930 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.057 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.13700 -38.43172 -35.54606 -32.47499 -31.11819 -27.89023 -26.41028 -23.40698 -21.56629 -19.71981 -19.03144 -16.80294 -16.13563 -15.51953 -15.11307 -14.52432 -13.96667 -13.89616 -12.59631 -12.44204 -12.27801 -11.87263 -11.29262 -10.97435 -10.80012 -10.61023 -10.01191 -9.60444 -9.16154 -8.88995 -8.54920 -7.94852 -6.22364 -4.28865 1.38773 2.87973 3.14939 3.22199 3.29778 3.33155 3.63907 4.31129 4.91385 5.09378 5.44416 5.62380 5.74194 6.02103 6.20322 6.48045 6.58086 6.71938 6.90031 7.17194 7.42289 7.49061 7.72986 8.07714 8.28146 8.73989 9.37376 10.86298 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.044704 B = 0.013180 C = 0.011091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.185150 B = 2123.980779 C = 2524.050869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.095 3.905 10 H 0.062 0.938 11 C -0.126 4.126 12 C 0.438 3.562 13 O -0.483 6.483 14 C -0.177 4.177 15 O -0.157 6.157 16 C -0.009 4.009 17 C -0.212 4.212 18 C -0.054 4.054 19 H 0.266 0.734 20 H 0.115 0.885 21 H 0.095 0.905 22 H 0.205 0.795 23 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -5.108 -2.195 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.077 3.923 10 H 0.080 0.920 11 C -0.164 4.164 12 C 0.321 3.679 13 O -0.362 6.362 14 C -0.225 4.225 15 O -0.053 6.053 16 C -0.079 4.079 17 C -0.231 4.231 18 C -0.056 4.056 19 H 0.076 0.924 20 H 0.133 0.867 21 H 0.113 0.887 22 H 0.221 0.779 23 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.972 -5.420 -1.413 6.866 hybrid contribution 0.720 0.912 -0.319 1.205 sum 4.692 -4.508 -1.732 6.733 Atomic orbital electron populations 1.69927 1.05915 1.27352 1.49119 1.24991 0.94969 0.99349 0.94489 0.86472 0.79880 0.82751 0.78289 1.20450 1.21006 1.19734 1.20917 0.93170 0.88846 1.52435 0.91905 1.17917 0.90667 0.89507 0.94185 0.92049 1.22461 1.00685 0.93714 0.99492 1.21252 0.78285 0.85164 0.83246 1.90502 1.60660 1.63110 1.21974 1.22846 1.02001 0.93107 1.04561 1.84001 1.39824 1.43240 1.38188 1.24426 0.97641 1.00049 0.85815 1.21171 1.00956 0.97785 1.03209 1.22641 0.94631 0.96100 0.92247 0.92429 0.86684 0.88656 0.77879 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.55 12.60 55.43 0.70 -22.85 14 2 C 0.07 1.68 5.15 -17.82 -0.09 1.59 14 3 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 14 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 14 7 C -0.52 -13.29 8.38 -34.44 -0.29 -13.58 14 8 H 0.06 1.63 7.76 -52.49 -0.41 1.22 14 9 C 0.10 2.27 2.89 -92.39 -0.27 2.00 14 10 H 0.06 1.51 8.14 -51.92 -0.42 1.09 14 11 C -0.13 -2.87 5.79 -27.31 -0.16 -3.03 14 12 C 0.44 10.02 7.49 -32.98 -0.25 9.77 14 13 O -0.48 -11.80 18.04 5.42 0.10 -11.70 14 14 C -0.18 -3.88 7.92 -38.70 -0.31 -4.19 14 15 O -0.16 -3.08 10.69 2.89 0.03 -3.05 14 16 C -0.01 -0.14 12.06 29.67 0.36 0.22 14 17 C -0.21 -3.75 10.87 -39.94 -0.43 -4.18 14 18 C -0.05 -1.17 6.34 -104.10 -0.66 -1.83 14 19 H 0.27 6.75 8.31 -40.82 -0.34 6.41 14 20 H 0.12 2.79 7.44 -51.93 -0.39 2.41 14 21 H 0.10 2.07 8.14 -51.93 -0.42 1.65 14 22 H 0.20 2.00 8.06 -52.49 -0.42 1.57 14 23 H 0.15 2.29 8.06 -52.49 -0.42 1.87 14 LS Contribution 214.98 15.07 3.24 3.24 Total: -1.00 -29.01 214.98 -4.67 -33.68 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -1.62 Total: -1.22 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.10 Total: -13.22 kcal Atomic # 7 Polarization: -23.55 SS G_CDS: 0.70 Total: -22.85 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.13 Total: -14.75 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -29.01 -4.67 -33.68 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260316097.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.557 kcal (2) G-P(sol) polarization free energy of solvation -29.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds