Wall clock time and date at job start Mon Mar 30 2020 20:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30948 * 1 3 3 Si 1.86793 * 120.00545 * 2 1 4 4 H 1.48501 * 109.47504 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47139 * 300.00317 * 3 2 1 6 6 H 1.48502 * 109.47220 * 60.00263 * 3 2 1 7 7 C 1.39951 * 119.99469 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.39888 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.39111 * 125.86476 * 180.02562 * 9 7 2 11 11 C 1.41115 * 106.99430 * 180.02562 * 10 9 7 12 12 C 1.40120 * 107.54346 * 0.14388 * 11 10 9 13 13 N 1.36428 * 108.03494 * 0.16109 * 12 11 10 14 14 H 0.96998 * 125.42552 * 180.18723 * 13 12 11 15 15 N 1.36924 * 110.95449 * 180.30037 * 12 11 10 16 16 C 1.46716 * 108.49480 * 359.76659 * 15 12 11 17 17 C 1.41882 * 142.83057 * 180.02562 * 11 10 9 18 18 O 1.21433 * 127.15757 * 0.03503 * 17 11 10 19 19 H 0.97004 * 119.99373 * 359.97438 * 1 2 3 20 20 H 1.07998 * 126.50240 * 359.96418 * 10 9 7 21 21 H 0.96996 * 125.75213 * 179.78104 * 15 12 11 22 22 H 1.09002 * 110.29111 * 241.06198 * 16 15 12 23 23 H 1.09000 * 110.37175 * 118.98352 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2436 1.6176 0.0000 4 1 3.7036 1.3462 -0.0006 5 1 1.8848 2.3964 -1.2125 6 1 1.8850 2.3963 1.2125 7 6 2.0091 -1.2121 -0.0005 8 1 3.0892 -1.2122 -0.0010 9 6 1.3096 -2.4235 -0.0005 10 6 1.8783 -3.6930 -0.0005 11 6 0.8154 -4.6212 -0.0011 12 6 -0.3815 -3.8926 -0.0049 13 7 -0.0678 -2.5649 -0.0101 14 1 -0.7077 -1.8359 -0.0109 15 7 -1.4647 -4.7302 0.0010 16 6 -0.9817 -6.1155 0.0036 17 6 0.5275 -6.0105 -0.0011 18 8 1.3264 -6.9250 0.0002 19 1 -0.4849 0.8401 0.0004 20 1 2.9332 -3.9244 -0.0011 21 1 -2.3945 -4.4541 0.0030 22 1 -1.3272 -6.6380 -0.8885 23 1 -1.3215 -6.6342 0.9001 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260524345.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:27 Heat of formation + Delta-G solvation = 16.475813 kcal Electronic energy + Delta-G solvation = -11373.206458 eV Core-core repulsion = 9187.246937 eV Total energy + Delta-G solvation = -2185.959521 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.24735 -37.45206 -35.44441 -33.16330 -29.77654 -28.26167 -26.63513 -24.54287 -20.49194 -19.75364 -18.39218 -17.33597 -16.55321 -15.10267 -15.01637 -14.09720 -13.80275 -13.48703 -12.90144 -12.51912 -12.10901 -12.05329 -11.34784 -11.19643 -10.73106 -10.67881 -10.21877 -9.72712 -8.92367 -8.61410 -7.53791 -6.96516 -6.53831 -4.18152 2.42803 2.89409 3.04125 3.11177 3.49402 3.78876 3.89255 4.51249 4.84409 5.28081 5.32639 5.60144 5.79722 6.36524 6.69646 6.98546 7.20739 7.21732 7.62095 7.75861 7.97884 8.30436 8.63010 8.64865 8.80550 8.98663 9.41657 10.13480 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.080143 B = 0.010296 C = 0.009169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.293163 B = 2718.856446 C = 3052.947782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.062 3.938 3 Si 0.932 3.068 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.440 4.440 8 H 0.097 0.903 9 C 0.222 3.778 10 C -0.269 4.269 11 C -0.320 4.320 12 C 0.262 3.738 13 N -0.534 5.534 14 H 0.422 0.578 15 N -0.719 5.719 16 C 0.083 3.917 17 C 0.404 3.596 18 O -0.510 6.510 19 H 0.285 0.715 20 H 0.114 0.886 21 H 0.405 0.595 22 H 0.091 0.909 23 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -0.860 0.004 4.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.147 4.147 3 Si 0.757 3.243 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.475 4.475 8 H 0.115 0.885 9 C 0.114 3.886 10 C -0.292 4.292 11 C -0.332 4.332 12 C 0.044 3.956 13 N -0.149 5.149 14 H 0.271 0.729 15 N -0.360 5.360 16 C -0.043 4.043 17 C 0.293 3.707 18 O -0.394 6.394 19 H 0.096 0.904 20 H 0.132 0.868 21 H 0.243 0.757 22 H 0.108 0.892 23 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.601 -1.109 -0.002 4.733 hybrid contribution -0.764 1.381 0.001 1.578 sum -5.365 0.272 -0.002 5.372 Atomic orbital electron populations 1.68695 1.07671 1.29473 1.44301 1.25881 0.94841 1.01791 0.92214 0.85842 0.80440 0.79745 0.78250 1.18387 1.20108 1.20103 1.18828 0.95017 0.87998 1.45682 0.88489 1.17743 0.78394 0.93726 0.98711 1.20114 0.95742 0.89274 1.24103 1.19341 0.93617 0.93608 1.26605 1.18388 0.88566 0.85505 1.03167 1.42694 1.09078 1.02622 1.60535 0.72921 1.43112 1.04485 1.03101 1.85349 1.21957 0.97058 0.82937 1.02364 1.20032 0.88898 0.88533 0.73282 1.90475 1.55450 1.47623 1.45859 0.90423 0.86830 0.75749 0.89155 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.90 10.63 55.55 0.59 -20.31 14 2 C 0.06 1.50 5.50 -17.29 -0.10 1.40 14 3 Si 0.93 18.40 29.56 -169.99 -5.03 13.37 14 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 14 6 H -0.28 -5.38 7.11 56.52 0.40 -4.98 14 7 C -0.44 -11.42 9.31 -38.32 -0.36 -11.77 14 8 H 0.10 2.41 7.85 -52.48 -0.41 2.00 14 9 C 0.22 5.91 6.68 -83.93 -0.56 5.35 14 10 C -0.27 -7.14 10.93 -38.17 -0.42 -7.56 14 11 C -0.32 -7.99 6.80 -106.71 -0.73 -8.72 14 12 C 0.26 5.96 8.95 -153.06 -1.37 4.59 14 13 N -0.53 -13.13 5.76 -9.39 -0.05 -13.18 14 14 H 0.42 10.10 6.18 -40.82 -0.25 9.85 14 15 N -0.72 -12.56 6.53 -60.43 -0.39 -12.96 14 16 C 0.08 1.37 7.85 -4.79 -0.04 1.33 14 17 C 0.40 9.09 7.74 -32.63 -0.25 8.83 14 18 O -0.51 -12.61 18.04 5.42 0.10 -12.51 14 19 H 0.28 6.27 8.30 -40.82 -0.34 5.93 14 20 H 0.11 2.93 8.06 -52.49 -0.42 2.51 14 21 H 0.41 5.64 8.96 -40.82 -0.37 5.28 14 22 H 0.09 1.26 8.14 -51.93 -0.42 0.84 14 23 H 0.09 1.27 8.14 -51.93 -0.42 0.85 14 LS Contribution 211.21 15.07 3.18 3.18 Total: -1.00 -29.50 211.21 -6.85 -36.35 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -1.43 Total: 12.60 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.81 Total: -6.55 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.14 Total: -46.45 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.10 Total: -12.51 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -29.50 -6.85 -36.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260524345.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.826 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds