Wall clock time and date at job start Mon Mar 30 2020 20:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38673 * 120.79137 * 2 1 4 4 C 1.38182 * 119.16903 * 180.23320 * 3 2 1 5 5 N 1.31886 * 120.76294 * 359.78473 * 4 3 2 6 6 C 1.31855 * 121.72431 * 359.97438 * 5 4 3 7 7 C 1.38227 * 120.76498 * 359.97275 * 6 5 4 8 8 C 1.50703 * 120.42026 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.46988 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46755 * 60.00226 * 8 7 6 11 11 C 1.50699 * 109.47531 * 300.00362 * 8 7 6 12 12 H 1.08005 * 119.99962 * 5.36791 * 11 8 7 13 13 C 1.37874 * 120.00215 * 185.37068 * 11 8 7 14 14 N 1.31510 * 120.00193 * 185.16460 * 13 11 8 15 15 Si 1.86801 * 120.00107 * 5.16728 * 13 11 8 16 16 H 1.48496 * 109.47141 * 270.00050 * 15 13 11 17 17 H 1.48509 * 109.46850 * 30.00123 * 15 13 11 18 18 H 1.48497 * 109.47154 * 149.99464 * 15 13 11 19 19 H 1.08997 * 109.46801 * 270.24347 * 1 2 3 20 20 H 1.09000 * 109.47033 * 30.24535 * 1 2 3 21 21 H 1.09001 * 109.46481 * 150.24927 * 1 2 3 22 22 H 1.08007 * 120.41521 * 0.02562 * 3 2 1 23 23 H 1.07995 * 119.62260 * 179.77225 * 4 3 2 24 24 H 1.07999 * 119.61977 * 179.97438 * 6 5 4 25 25 H 1.08994 * 109.47416 * 54.95298 * 10 8 7 26 26 H 1.08996 * 109.47058 * 174.95285 * 10 8 7 27 27 H 1.09000 * 109.46997 * 294.94953 * 10 8 7 28 28 H 0.97004 * 119.99736 * 355.00028 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0049 5 7 4.2404 0.0002 -0.0053 6 6 3.5984 -1.1515 -0.0006 7 6 2.2167 -1.1908 0.0056 8 6 1.4909 -2.5116 0.0116 9 1 0.4153 -2.3350 0.0164 10 6 1.8829 -3.3032 1.2609 11 6 1.8662 -3.2966 -1.2188 12 1 2.6250 -2.9203 -1.8890 13 6 1.2409 -4.4953 -1.4891 14 7 1.6378 -5.2296 -2.5054 15 14 -0.1702 -5.0765 -0.4117 16 1 0.3651 -5.8927 0.7073 17 1 -0.8925 -3.8998 0.1351 18 1 -1.1049 -5.8987 -1.2213 19 1 -0.3633 0.0044 1.0276 20 1 -0.3633 0.8878 -0.5176 21 1 -0.3632 -0.8923 -0.5100 22 1 1.6966 2.1378 0.0004 23 1 4.1583 2.0755 -0.0087 24 1 4.1586 -2.0748 -0.0015 25 1 1.6942 -2.6988 2.1481 26 1 1.2920 -4.2176 1.3118 27 1 2.9418 -3.5571 1.2127 28 1 2.3207 -4.8953 -3.1077 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260576244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:24:29 Heat of formation + Delta-G solvation = -2.997572 kcal Electronic energy + Delta-G solvation = -11677.307181 eV Core-core repulsion = 9691.762237 eV Total energy + Delta-G solvation = -1985.544945 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.20286 -36.82963 -34.69086 -33.55748 -30.69856 -28.54648 -26.78159 -24.88488 -22.98514 -21.31560 -19.62430 -17.52955 -17.19539 -16.28971 -15.51162 -15.29243 -14.90357 -14.51379 -13.98872 -13.81617 -13.66231 -13.46446 -13.24607 -12.91865 -12.34645 -12.06985 -11.63073 -11.53034 -10.92707 -10.63099 -10.24889 -10.19983 -9.75033 -8.69598 -6.39464 0.32177 0.44456 1.44818 1.54241 1.71068 2.49223 2.95006 3.10844 3.63799 3.93523 3.97842 4.15758 4.26951 4.58981 4.64637 4.70362 4.80157 4.82054 4.87038 5.09467 5.10626 5.18580 5.33468 5.43902 5.74078 5.88853 6.00565 6.07982 6.53766 7.12880 7.40440 8.65562 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.047475 B = 0.012813 C = 0.011654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.638425 B = 2184.808037 C = 2401.945435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 C -0.166 4.166 4 C 0.068 3.932 5 N -0.517 5.517 6 C 0.082 3.918 7 C -0.106 4.106 8 C 0.039 3.961 9 H 0.055 0.945 10 C -0.140 4.140 11 C -0.581 4.581 12 H 0.011 0.989 13 C -0.026 4.026 14 N -0.948 5.948 15 Si 1.092 2.908 16 H -0.264 1.264 17 H -0.241 1.241 18 H -0.295 1.295 19 H 0.092 0.908 20 H 0.092 0.908 21 H 0.060 0.940 22 H 0.169 0.831 23 H 0.184 0.816 24 H 0.130 0.870 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.972 11.659 8.420 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.089 4.089 5 N -0.227 5.227 6 C -0.074 4.074 7 C -0.108 4.108 8 C 0.020 3.980 9 H 0.072 0.928 10 C -0.198 4.198 11 C -0.619 4.619 12 H 0.030 0.970 13 C -0.222 4.222 14 N -0.585 5.585 15 Si 0.913 3.087 16 H -0.190 1.190 17 H -0.165 1.165 18 H -0.222 1.222 19 H 0.110 0.890 20 H 0.111 0.889 21 H 0.079 0.921 22 H 0.187 0.813 23 H 0.200 0.800 24 H 0.148 0.852 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.077 10.418 8.661 14.148 hybrid contribution 0.904 0.747 -1.005 1.544 sum -3.173 11.166 7.656 13.905 Atomic orbital electron populations 1.20904 0.88862 1.03650 1.03764 1.20663 0.98296 0.92351 0.96102 1.22317 0.95316 0.99072 1.01793 1.23218 0.92820 0.96207 0.96678 1.67607 1.42291 0.99174 1.13638 1.22389 0.92248 0.95502 0.97232 1.21067 0.95031 0.96857 0.97825 1.18318 0.96458 0.89338 0.93929 0.92764 1.22037 1.00859 0.99492 0.97377 1.22191 1.22800 1.08008 1.08872 0.97025 1.27302 1.02200 0.93639 0.99071 1.70948 1.31714 1.38623 1.17186 0.83458 0.73508 0.77381 0.74332 1.18954 1.16519 1.22187 0.88991 0.88945 0.92107 0.81305 0.79956 0.85213 0.92336 0.93544 0.94019 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.46 71.24 0.67 -2.48 15 2 C -0.07 -2.24 5.92 -19.67 -0.12 -2.36 15 3 C -0.17 -4.64 9.82 22.36 0.22 -4.42 15 4 C 0.07 2.06 11.18 84.67 0.95 3.01 15 5 N -0.52 -20.19 10.36 -195.85 -2.03 -22.22 15 6 C 0.08 3.53 9.90 84.69 0.84 4.37 15 7 C -0.11 -4.42 4.75 -19.77 -0.09 -4.52 15 8 C 0.04 1.77 1.88 -12.28 -0.02 1.75 15 9 H 0.05 2.35 4.12 -2.39 -0.01 2.34 15 10 C -0.14 -5.76 8.53 71.98 0.61 -5.15 15 11 C -0.58 -32.82 8.64 25.60 0.22 -32.60 15 12 H 0.01 0.73 7.77 -2.91 -0.02 0.71 15 13 C -0.03 -1.49 5.43 84.65 0.46 -1.03 15 14 N -0.95 -60.11 13.70 21.45 0.29 -59.81 15 15 Si 1.09 49.08 25.29 68.60 1.73 50.82 15 16 H -0.26 -11.02 6.81 99.48 0.68 -10.35 15 17 H -0.24 -9.32 6.36 99.48 0.63 -8.69 15 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 15 19 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 20 H 0.09 1.96 8.10 -2.39 -0.02 1.94 15 21 H 0.06 1.94 6.22 -2.39 -0.01 1.93 15 22 H 0.17 3.17 8.06 -2.91 -0.02 3.15 15 23 H 0.18 3.99 8.06 -2.91 -0.02 3.97 15 24 H 0.13 5.95 7.66 -2.91 -0.02 5.92 15 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 26 H 0.05 1.87 4.40 -2.39 -0.01 1.86 15 27 H 0.04 1.75 7.60 -2.39 -0.02 1.74 15 28 H 0.25 16.17 8.72 -92.71 -0.81 15.36 15 Total: -1.00 -68.15 232.12 4.74 -63.40 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.01 Total: 11.24 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 3.74 Total: -43.42 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.74 Total: -82.04 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.73 Total: 50.82 kcal Total: -68.15 4.74 -63.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260576244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.404 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds